RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RBMXP38159 391 aaKnown RBP12.64□□□□□ -0.39
SS18-215ENST00000580642 MECP2P51608 486 aaKnown RBP12.64□□□□□ -0.39
SS18-215ENST00000580642 Q3ZCU0 254 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 ESCO2Q56NI9 601 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L9Q6RFH8 374 aaPredicted RBP12.64□□□□□ -0.39
SS18-215ENST00000580642 MRGPRDQ8TDS7 321 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 ARL11Q969Q4 196 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 GINS4Q9BRT9 223 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 BPESC1Q9GZL8 116 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 CALYQ9NYX4 217 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4Q9UBX2 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 USF3Q68DE3 2245 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DOPEY2Q9Y3R5 2298 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 IGKV1-6A0A0C4DH72 117 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 RGS11O94810 467 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 IGHV2-5P01817 119 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 FPR2P25090 351 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 KRTAP10-9P60411 292 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 GNB2P62879 340 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 HERPUD1Q15011 391 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 MSMO1Q15800 293 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 IGSF11Q5DX21 431 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 TMEM200BQ69YZ2 307 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 FAAP20Q6NZ36 180 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 Q6ZNX1 250 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 H1FOOQ8IZA3 346 aaPredicted RBP12.63□□□□□ -0.39
SS18-215ENST00000580642 LY6G5BQ8NDX9 201 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 MOB3AQ96BX8 217 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 PERPQ96FX8 193 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 KIRREL1Q96J84 757 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 ZNF714Q96N38 554 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 SSBP3Q9BWW4 388 aaPredicted RBP12.63□□□□□ -0.39
SS18-215ENST00000580642 ALX4Q9H161 411 aaPredicted RBP12.63□□□□□ -0.39
SS18-215ENST00000580642 ING3Q9NXR8 418 aa12.63□□□□□ -0.39
SS18-215ENST00000580642 hCG_1809904A0A1W2PP81 198 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 A0A1W2PPE2 198 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 A0A1W2PR64 198 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 A0A1W2PRV1 198 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 SDCBPO00560 298 aaPredicted RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 HSPA12AO43301 675 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 PRAF2O60831 178 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 LIPFP07098 398 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 ZNF728P0DKX0 622 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 FCGR2CP31995 323 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 CCR6P51684 374 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 UBE2MP61081 183 aaKnown RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 SCGB2B2Q4G0G5 96 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 FAHD2BQ6P2I3 314 aaPredicted RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 HEPN1Q6WQI6 88 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 TPRX1Q8N7U7 411 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 OR13C8Q8NGS7 320 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 ZFAND1Q8TCF1 268 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 FAHD2AQ96GK7 314 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 ZNF486Q96H40 463 aaPredicted RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 ZNF2Q9BSG1 426 aaPredicted RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 GHITMQ9H3K2 345 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 C19orf12Q9NSK7 152 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 RPUSD1Q9UJJ7 312 aaKnown RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 POLR3KQ9Y2Y1 108 aaPredicted RBP12.62□□□□□ -0.39
SS18-215ENST00000580642 OR2W1Q9Y3N9 320 aa12.62□□□□□ -0.39
SS18-215ENST00000580642 DCHS2Q6V1P9 2916 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 INMT-MINDY4F8WBC2 141 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 BET1O15155 118 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 YPEL1O60688 119 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 PEX14O75381 377 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 FOXH1O75593 365 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 FCN3O75636 299 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 SLC22A5O76082 557 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 DHFRP00374 187 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 PPYP01298 95 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 H2AFB2P0C5Z0 115 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 HERV-K104P61576 105 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 LMO4P61968 165 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 C17orf58Q2M2W7 97 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 AADACL3Q5VUY0 350 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 C1orf122Q6ZSJ8 110 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 TCF23Q7RTU1 214 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 SLC38A6Q8IZM9 456 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 IL1F10Q8WWZ1 152 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 EDARADDQ8WWZ3 215 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 H1FXQ92522 213 aaKnown RBP12.61□□□□□ -0.39
SS18-215ENST00000580642 NRGNQ92686 78 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 YPEL2Q96QA6 119 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 C20orf85Q9H1P6 137 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 NUDT15Q9NV35 164 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 ZNF69Q9UC07 566 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 PTPN13Q12923 2485 aa12.61□□□□□ -0.39
SS18-215ENST00000580642 LOC105371242A0A075B767 164 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 FAM172BPA6NC97 362 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 SSTR5P35346 364 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 TAS2R31P59538 309 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 CLEC12BQ2HXU8 276 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 C11orf88Q6PI97 169 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 KIR3DL3Q8N743 410 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 C8orf31Q8N9H6 132 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 OR1L1Q8NH94 360 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 CLDND2Q8NHS1 167 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 UPRTQ96BW1 309 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 OR2S2Q9NQN1 319 aa12.6□□□□□ -0.39
SS18-215ENST00000580642 IDI2-AS1Q9NZ38 188 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms