RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RPS27AP62979 156 aaKnown RBP19.13■□□□□ 0.65
SHMT1-206ENST00000579558 FABP5Q01469 135 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 GAPTQ8N292 157 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 KCNG3Q8TAE7 436 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 CYYR1Q96J86 154 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 NEDD4LQ96PU5 975 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 SLC25A33Q9BSK2 321 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 KCNK15Q9H427 330 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 Q9H521 79 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 RAB9BQ9NP90 201 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 ACOT13Q9NPJ3 140 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 TET2Q6N021 2002 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-206ENST00000579558 SPINT2O43291 252 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 BPNT1O95861 308 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 CALRP27797 417 aaKnown RBP19.12■□□□□ 0.65
SHMT1-206ENST00000579558 LOXL3P58215 753 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 GABARAPL2P60520 117 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 DIAPH2-AS1Q14236 149 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 FBLN7Q53RD9 439 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 TRAT1Q6PIZ9 186 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 Q6ZS46 218 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 C11orf44Q8N8P7 122 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 RBM14Q96PK6 669 aaKnown RBP19.12■□□□□ 0.65
SHMT1-206ENST00000579558 GFI1Q99684 422 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 PLGRKTQ9HBL7 147 aa19.12■□□□□ 0.65
SHMT1-206ENST00000579558 AK6Q9Y3D8 172 aaKnown RBP19.12■□□□□ 0.65
SHMT1-206ENST00000579558 A0A1W2PPI3 338 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 PEX14O75381 377 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 OR2F2O95006 317 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 FAM106CPP0CH98 169 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 RCC1P18754 421 aaPredicted RBP19.11■□□□□ 0.65
SHMT1-206ENST00000579558 CHATP28329 748 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 RAB7AP51149 207 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 UNC119Q13432 240 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 C2orf68Q2NKX9 166 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 FAM53AQ6NSI3 398 aaPredicted RBP19.11■□□□□ 0.65
SHMT1-206ENST00000579558 PRR18Q8N4B5 295 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 OR56B4Q8NH76 319 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 MMP27Q9H306 513 aa19.11■□□□□ 0.65
SHMT1-206ENST00000579558 TMEM14DPA8MWL7 114 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 SLC17A2O00624 439 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 TSPAN15O95858 294 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 HBZP02008 142 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 VDAC2P45880 294 aaPredicted RBP19.1■□□□□ 0.65
SHMT1-206ENST00000579558 QRFPP83859 136 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 P2RY14Q15391 338 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 SSX1Q16384 188 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 TMEM30BQ3MIR4 351 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 OR8H3Q8N146 312 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 LINC00311Q8N616 119 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 DRAM1Q8N682 238 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 OR1L1Q8NH94 360 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 CFHR4Q92496 578 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 NICN1Q9BSH3 213 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 TM2D1Q9BX74 207 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 GNG12Q9UBI6 72 aa19.1■□□□□ 0.65
SHMT1-206ENST00000579558 HSD17B6O14756 317 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 MRPS14O60783 128 aaKnown RBP19.09■□□□□ 0.65
SHMT1-206ENST00000579558 SNRNP70P08621 437 aaKnown RBP19.09■□□□□ 0.65
SHMT1-206ENST00000579558 EMX1Q04741 257 aaPredicted RBP19.09■□□□□ 0.65
SHMT1-206ENST00000579558 RAB11BQ15907 218 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 TMEM95Q3KNT9 176 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 HIST2H2BDQ6DRA6 164 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 THNSL2Q86YJ6 484 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 SVOPQ8N4V2 548 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 C8orf31Q8N9H6 132 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 MRPL30Q8TCC3 161 aaKnown RBP19.09■□□□□ 0.65
SHMT1-206ENST00000579558 SULT4A1Q9BR01 284 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 OCSTAMPQ9BR26 566 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 TAF9BQ9HBM6 251 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 MBNL3Q9NUK0 354 aaKnown RBP19.09■□□□□ 0.65
SHMT1-206ENST00000579558 KCNIP1Q9NZI2 227 aa19.09■□□□□ 0.65
SHMT1-206ENST00000579558 WNK1Q9H4A3 2382 aa19.08■□□□□ 0.65
SHMT1-206ENST00000579558 FAM90A9PA6NNJ1 464 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 CCRL2O00421 344 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 DENRO43583 198 aaKnown RBP19.08■□□□□ 0.64
SHMT1-206ENST00000579558 CSF1P09603 554 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 ARSBP15848 533 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 Q3ZCU0 254 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 ABCA11PQ4W5N1 156 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 OR2W3Q7Z3T1 314 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 C6orf201Q7Z4U5 140 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 OR10V1Q8NGI7 309 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 FAAP24Q9BTP7 215 aa19.08■□□□□ 0.64
SHMT1-206ENST00000579558 FBXO24O75426 580 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 GAPDHP04406 335 aaKnown RBP19.07■□□□□ 0.64
SHMT1-206ENST00000579558 IL3RAP26951 378 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 BLVRBP30043 206 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-206ENST00000579558 REG1BP48304 166 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 ZNF816Q0VGE8 651 aaPredicted RBP19.07■□□□□ 0.64
SHMT1-206ENST00000579558 HES1Q14469 280 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 URM1Q9BTM9 101 aaKnown RBP19.07■□□□□ 0.64
SHMT1-206ENST00000579558 WNT10AQ9GZT5 417 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 NDUFB11Q9NX14 153 aa19.07■□□□□ 0.64
SHMT1-206ENST00000579558 M0QZK8 103 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 SLC31A2O15432 143 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 MOB3BQ86TA1 216 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 ZNF554Q86TJ5 538 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 ZNF439Q8NDP4 499 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 LPAR5Q9H1C0 372 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms