RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ARL2P36404 184 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 CCR2P41597 374 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 KIR2DS2P43631 304 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PPICP45877 212 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 TTPAP49638 278 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 KLK7P49862 253 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 RAB7AP51149 207 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 DVL1P1P54792 670 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 TAS2R41P59536 307 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 NAA20P61599 178 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 NUTF2P61970 127 aaKnown RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 GNG3P63215 75 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MS4A2Q01362 244 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 ECH1Q13011 328 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PPP1R1AQ13522 171 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 RBMS2Q15434 407 aaKnown RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 MAPK14Q16539 360 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 ASPRV1Q53RT3 343 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 SYT6Q5T7P8 510 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 HES5Q5TA89 166 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 TSPO2Q5TGU0 170 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 C1orf146Q5VVC0 180 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 C5orf46Q6UWT4 87 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 FAM131AQ6UXB0 335 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PTAR1Q7Z6K3 402 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 TMED4Q7Z7H5 227 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PPP1R27Q86WC6 154 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 BBS7Q8IWZ6 715 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 OR8G5Q8NG78 346 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 OR52E4Q8NGH9 312 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 OR2A12Q8NGT7 310 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 DOK4Q8TEW6 326 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MAFIPQ8WZ33 124 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 MARC2Q969Z3 335 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 TAMM41Q96BW9 452 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 DDIT4LQ96D03 193 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 RCN3Q96D15 328 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PGLYRP4Q96LB8 373 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 BIRC8Q96P09 236 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 KCTD14Q9BQ13 255 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 RTBDNQ9BSG5 229 aaPredicted RBP2.3□□□□□ -2.04
VPS35-209ENST00000568642 PECRQ9BY49 303 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 FBXL15Q9H469 300 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 RNF7Q9UBF6 113 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 OR12D3Q9UGF7 316 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 OR52A1Q9UKL2 312 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 NEU3Q9UQ49 428 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 UFC1Q9Y3C8 167 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 TRPM6Q9BX84 2022 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 FREM1Q5H8C1 2179 aa2.3□□□□□ -2.04
VPS35-209ENST00000568642 PRR14LQ5THK1 2151 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PIKFYVEQ9Y2I7 2098 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PHF3Q92576 2039 aaKnown RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 FANCIQ9NVI1 1328 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 A0A1B0GV90 55 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 MIF4GDA9UHW6 222 aaKnown RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 KLLNB2CW77 178 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 H0Y9J4 135 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 FABP7O15540 132 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 STK16O75716 305 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 S1PR2O95136 353 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PPP1R3DO95685 299 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 CYB5R3P00387 301 aaPredicted RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 THY1P04216 161 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SCGB1A1P11684 91 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 CD1DP15813 335 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 CXCL3P19876 107 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 TCN2P20062 427 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PVALBP20472 110 aaPredicted RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 PSMB1P20618 241 aaKnown RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 PYCR1P32322 319 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PRSS3P35030 304 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PFN2P35080 140 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 RAB5BP61020 215 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 COL10A1Q03692 680 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 RUNX3Q13761 415 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SMCO1Q147U7 214 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ZNF585BQ52M93 769 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 TMEM97Q5BJF2 176 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 C1orf195Q5TG92 126 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SPATA31B1PQ5VZV4 182 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 TRIQKQ629K1 86 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 RUSC1-AS1Q66K80 236 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 REP15Q6BDI9 236 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 OR2T5Q6IEZ7 315 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 FAM71E1Q6IPT2 247 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 C11orf71Q6IPW1 123 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 REG3GQ6UW15 175 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 BAIAP2L2Q6UXY1 529 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 RFLNAQ6ZTI6 216 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 FAM183BPQ6ZVS7 135 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ZNF627Q7L945 461 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 C11orf53Q8IXP5 236 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SAMD12Q8N8I0 201 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ST6GALNAC3Q8NDV1 305 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 OR8J3Q8NGG0 315 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 OR1L8Q8NGR8 309 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 OR2T29Q8NH02 315 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 MPLKIPQ8TAP9 179 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms