RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF626Q68DY1 528 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 SLC35E4Q6ICL7 350 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 TMEM219Q86XT9 240 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 OR4P4Q8NGL7 312 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 OR13D1Q8NGV5 346 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 OR5H6Q8NGV6 325 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 MRPL30Q8TCC3 161 aaKnown RBP11.18□□□□□ -0.62
CLN3-235ENST00000568497 SSMEM1Q8WWF3 244 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 ARL11Q969Q4 196 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 ARHGAP5-AS1Q96IT6 56 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 CLEC7AQ9BXN2 247 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 CST11Q9H112 138 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 IFT22Q9H7X7 185 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 STEAP1Q9UHE8 339 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 AK3Q9UIJ7 227 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 DAPK2Q9UIK4 370 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 SIGLEC9Q9Y336 463 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 NOTCH3Q9UM47 2321 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 TRAV1-2A0A0B4J238 106 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 IFITM5A6NNB3 132 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 LDLRAD4O15165 306 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 IL1AP01583 271 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 FBP1P09467 338 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 FUT3P21217 361 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 LGALS4P56470 323 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 TMEM50BP56557 158 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 HEPN1Q6WQI6 88 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 IZUMO1Q8IYV9 350 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 OR52L2PQ8NGH6 319 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 PIFOQ8TCI5 191 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 MAFIPQ8WZ33 124 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 TM2D1Q9BX74 207 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 GAL3ST2Q9H3Q3 398 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 LIN7BQ9HAP6 207 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 OR6C3Q9NZP0 311 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 TRAPPC2LQ9UL33 140 aa11.17□□□□□ -0.62
CLN3-235ENST00000568497 hCG_1809904A0A1W2PP81 198 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 A0A1W2PPE2 198 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 A0A1W2PR64 198 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 A0A1W2PRV1 198 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 FUOMA2VDF0 154 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 SH2D7A6NKC9 451 aaPredicted RBP11.16□□□□□ -0.62
CLN3-235ENST00000568497 ZNF729A6NN14 1252 aaPredicted RBP11.16□□□□□ -0.62
CLN3-235ENST00000568497 FOXI3A8MTJ6 420 aaPredicted RBP11.16□□□□□ -0.62
CLN3-235ENST00000568497 CHST1O43916 411 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 REG1BP48304 166 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 NCS1P62166 190 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 MADCAM1Q13477 382 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 LINC00596Q86U02 117 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 LDLRAD3Q86YD5 345 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 OR11H6Q8NGC7 330 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 KCNG3Q8TAE7 436 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 LGALS14Q8TCE9 139 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 NEDD4LQ96PU5 975 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 PCDHB16Q9NRJ7 776 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 TAS2R3Q9NYW6 316 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 PSG11Q9UQ72 335 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 BIRC6Q9NR09 4857 aa11.16□□□□□ -0.62
CLN3-235ENST00000568497 FAM90A8PA6NJQ4 464 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 NPIPB11E5RHQ5 1161 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 SDCBPO00560 298 aaPredicted RBP11.15□□□□□ -0.62
CLN3-235ENST00000568497 PDCD5O14737 125 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 HBZP02008 142 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 UBBP0CG47 229 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 GNB3P16520 340 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 IDNKQ5T6J7 187 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 Q6ZSV7 163 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 Q6ZTK2 550 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 BEND2Q8NDZ0 799 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 MRPS24Q96EL2 167 aaKnown RBP11.15□□□□□ -0.62
CLN3-235ENST00000568497 DMRTB1Q96MA1 342 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 KCTD7Q96MP8 289 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 PECRQ9BY49 303 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 PARP12Q9H0J9 701 aaKnown RBP11.15□□□□□ -0.62
CLN3-235ENST00000568497 CHMP1AQ9HD42 196 aaPredicted RBP11.15□□□□□ -0.62
CLN3-235ENST00000568497 GHRLQ9UBU3 117 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 FBLN5Q9UBX5 448 aa11.15□□□□□ -0.62
CLN3-235ENST00000568497 IGHV3-72A0A0B4J1Y9 119 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 TRIM64CA6NLI5 447 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 TOR1AO14656 332 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 AIREO43918 545 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 FCER2P06734 321 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 CD3GP09693 182 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 FGF9P31371 208 aaPredicted RBP11.14□□□□□ -0.63
CLN3-235ENST00000568497 HABP2Q14520 560 aaPredicted RBP11.14□□□□□ -0.63
CLN3-235ENST00000568497 LRRC75BQ2VPJ9 315 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 SFXN4Q6P4A7 337 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 Q6ZS46 218 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 OR2W3Q7Z3T1 314 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 ZNF565Q8N9K5 539 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 FUNDC2Q9BWH2 189 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 C16orf95Q9H693 158 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 TAF9BQ9HBM6 251 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 PLEKHJ1Q9NW61 149 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 ZNF230Q9UIE0 474 aaPredicted RBP11.14□□□□□ -0.63
CLN3-235ENST00000568497 KCNK7Q9Y2U2 307 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 DNAH3Q8TD57 4116 aa11.14□□□□□ -0.63
CLN3-235ENST00000568497 EPPK1P58107 5090 aaKnown RBP11.13□□□□□ -0.63
CLN3-235ENST00000568497 NOTOA8MTQ0 251 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 J3QR06 171 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms