RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 LIMS4P0CW20 117 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 PPP3R1P63098 170 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 CFHR3Q02985 330 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 C9orf66Q5T8R8 295 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 RNF152Q8N8N0 203 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 C8orf31Q8N9H6 132 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 TMEM138Q9NPI0 162 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 RRP9O43818 475 aaKnown RBP13.18□□□□□ -0.3
CLN3-211ENST00000564091 ORC5O43913 435 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 IL3RAP26951 378 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 ZNF134P52741 427 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 SLC22A6Q4U2R8 563 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 RPL22L1Q6P5R6 122 aaKnown RBP13.18□□□□□ -0.3
CLN3-211ENST00000564091 ZNF497Q6ZNH5 498 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 OR10V1Q8NGI7 309 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 APH1BQ8WW43 257 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 S100A13Q99584 98 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 SLC29A1Q99808 456 aa13.18□□□□□ -0.3
CLN3-211ENST00000564091 MRPS18AQ9NVS2 196 aaKnown RBP13.18□□□□□ -0.3
CLN3-211ENST00000564091 RPL36Q9Y3U8 105 aaKnown RBP13.18□□□□□ -0.3
CLN3-211ENST00000564091 SIRT4Q9Y6E7 314 aaPredicted RBP13.18□□□□□ -0.3
CLN3-211ENST00000564091 DNAH7Q8WXX0 4024 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 LOC100130705A0A1B0GUX0 176 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 C12orf77C9JDV5 145 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 AIPO00170 330 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 IGHG4P01861 327 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 VDAC1P21796 283 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 BDKRB2P30411 391 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 SOX6P35712 828 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 VHLP40337 213 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 SMN1Q16637 294 aaKnown RBP13.17□□□□□ -0.3
CLN3-211ENST00000564091 MPV17LQ2QL34 196 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 ZNF260Q3ZCT1 412 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 KLHL22Q53GT1 634 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 CT45A1Q5HYN5 189 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 OR2G6Q5TZ20 316 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 FAM71E2Q8N5Q1 922 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 ZNF439Q8NDP4 499 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 OR13C5Q8NGS8 318 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 CT45A3Q8NHU0 189 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 KCTD7Q96MP8 289 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 GNG12Q9UBI6 72 aa13.17□□□□□ -0.3
CLN3-211ENST00000564091 MAGEA13PA6NCF6 341 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 SLC2A2P11168 524 aaPredicted RBP13.16□□□□□ -0.3
CLN3-211ENST00000564091 GTF2F2P13984 249 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 PSMB8P28062 276 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 ETV1P50549 477 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 FHL3Q13643 280 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 CCDC58Q4VC31 144 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 SYT6Q5T7P8 510 aaPredicted RBP13.16□□□□□ -0.3
CLN3-211ENST00000564091 SLC25A48Q6ZT89 311 aaKnown RBP13.16□□□□□ -0.3
CLN3-211ENST00000564091 LINC00596Q86U02 117 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 PRR18Q8N4B5 295 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 STX19Q8N4C7 294 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 OR11H1Q8NG94 326 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 OR8H1Q8NGG4 311 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 OR4K15Q8NH41 348 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 OR1L1Q8NH94 360 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 C4orf3Q8WVX3 66 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 CYYR1Q96J86 154 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 ZNF184Q99676 751 aaPredicted RBP13.16□□□□□ -0.3
CLN3-211ENST00000564091 PAK1IP1Q9NWT1 392 aaPredicted RBP13.16□□□□□ -0.3
CLN3-211ENST00000564091 TRAPPC2LQ9UL33 140 aa13.16□□□□□ -0.3
CLN3-211ENST00000564091 DYNC1I1O14576 645 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 ZNF780AO75290 641 aaPredicted RBP13.15□□□□□ -0.3
CLN3-211ENST00000564091 MYF6P23409 242 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 RIPK1Q13546 671 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 ZFP1Q6P2D0 407 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 KLK15Q9H2R5 256 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 FGF20Q9NP95 211 aaPredicted RBP13.15□□□□□ -0.3
CLN3-211ENST00000564091 ETAA1Q9NY74 926 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 ZNF107Q9UII5 783 aaPredicted RBP13.15□□□□□ -0.3
CLN3-211ENST00000564091 WSB1Q9Y6I7 421 aa13.15□□□□□ -0.3
CLN3-211ENST00000564091 MCRIP1C9JLW8 97 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 SPINT2O43291 252 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 LALBAP00709 142 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 HBZP02008 142 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 IGF1P05019 195 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 IGFBP3P17936 291 aaPredicted RBP13.14□□□□□ -0.31
CLN3-211ENST00000564091 RCC1P18754 421 aaPredicted RBP13.14□□□□□ -0.31
CLN3-211ENST00000564091 ZNF137PP52743 207 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 Q3ZCU0 254 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 C5orf24Q7Z6I8 188 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 MUL1Q969V5 352 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 RITA1Q96K30 269 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 OR5B12Q96R08 314 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 GNB4Q9HAV0 340 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 BABAM2Q9NXR7 383 aa13.14□□□□□ -0.31
CLN3-211ENST00000564091 RCC2Q9P258 522 aaKnown RBP13.14□□□□□ -0.31
CLN3-211ENST00000564091 ZNF256Q9Y2P7 627 aaPredicted RBP13.14□□□□□ -0.31
CLN3-211ENST00000564091 TRAV8-7A0A075B6U6 113 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 G3V318 75 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 OGG1O15527 345 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 TXNL1O43396 289 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 WBP4O75554 376 aaKnown RBP13.13□□□□□ -0.31
CLN3-211ENST00000564091 LY86O95711 162 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 OR5H8P0DN80 308 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 ADARB1P78563 741 aaKnown RBP13.13□□□□□ -0.31
CLN3-211ENST00000564091 KIAA0141Q14154 515 aaPredicted RBP13.13□□□□□ -0.31
CLN3-211ENST00000564091 MMDQ15546 238 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms