RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ACP6Q9NPH0 428 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 ACOT13Q9NPJ3 140 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 MMP26Q9NRE1 261 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TAS2R8Q9NYW2 309 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 FLRT3Q9NZU0 649 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 THYN1Q9P016 225 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 PRNDQ9UKY0 176 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 LSM4Q9Y4Z0 139 aaKnown RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 ROBO3Q96MS0 1386 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CDC42BPBQ9Y5S2 1711 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 IGHV4-28A0A0C4DH34 117 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 LOC100130705A0A1B0GUX0 176 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 PRSS51A0A1B0GVH4 220 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 TSPAN11A1L157 253 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 LILRA5A6NI73 299 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 DHRS3O75911 302 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 KLF8O95600 359 aaPredicted RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 AIFM1O95831 613 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 RENP00797 406 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 CT45A10P0DMU9 189 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 AOC1P19801 751 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 PRTN3P24158 256 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 LOXP28300 417 aaPredicted RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 G6PCP35575 357 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 TSFMP43897 325 aaKnown RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 OR3A2P47893 321 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 CLDN2P57739 230 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 GNG5P63218 68 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 BTG2P78543 158 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 RAB40BQ12829 278 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 DHRS2Q13268 280 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 VGLL4Q14135 290 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 SPHARQ15513 63 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 CCL15Q16663 113 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 ACSF3Q4G176 576 aaPredicted RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 TCEAL5Q5H9L2 206 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 BCL2L15Q5TBC7 163 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 SPSB3Q6PJ21 355 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 GLIPR1L1Q6UWM5 242 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 Q6ZSR6 202 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 FAM231DQ6ZW35 169 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 C16orf82Q7Z2V1 217 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 P2RY8Q86VZ1 359 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 PPP1R27Q86WC6 154 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 ZNF440Q8IYI8 595 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 TMEM86BQ8N661 226 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 PLPP5Q8NEB5 264 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 ACVR1CQ8NER5 493 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 OR51A2Q8NGJ7 313 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 OR51T1Q8NGJ9 327 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 CRYGNQ8WXF5 182 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 PSMF1Q92530 271 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 NDRG1Q92597 394 aaKnown RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 UBE2E3Q969T4 207 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 BORCS7Q96B45 105 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 OR4K3Q96R72 315 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 CLCC1Q96S66 551 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 SLC25A31Q9H0C2 315 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 FGF20Q9NP95 211 aaPredicted RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 ACER3Q9NUN7 267 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 VAX2Q9UIW0 290 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 ANXA10Q9UJ72 324 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 POMPQ9Y244 141 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 ASF1AQ9Y294 204 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 HDGFL3Q9Y3E1 203 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 KIF1AQ12756 1690 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 QRICH2Q9H0J4 1663 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 LAMB4A4D0S4 1761 aa4.24□□□□□ -1.73
VPS35-205ENST00000563984 RNF17Q9BXT8 1623 aaKnown RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 ZNF106Q9H2Y7 1883 aaKnown RBP4.24□□□□□ -1.73
VPS35-205ENST00000563984 CACNA1FO60840 1977 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 SETBP1Q9Y6X0 1596 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 A0A0D9SG52 128 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 IGHV1-69-2A0A0G2JMI3 117 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 A0A1W2PP18 115 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 A0A1W2PPK0 400 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 hADV38S2A0JD32 116 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 MEIS3P1A6NDR6 274 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 CEACAM18A8MTB9 384 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 H7C1C5 153 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ZNF195O14628 629 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TRAF3IP2O43734 574 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 ZIC3O60481 467 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TBL1XO60907 577 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 STK17BO94768 372 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 OR2H2O95918 312 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 HLA-DQB2P05538 268 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 CTSDP07339 412 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 TACSTD2P09758 323 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 H2BFMP0C1H6 154 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 FAM106CPP0CH98 169 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ERGP11308 486 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 HIST1H1DP16402 221 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 RPL35AP18077 110 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 RPL7P18124 248 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 ATF1P18846 271 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 BLVRBP30043 206 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 TFPI2P48307 235 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 GPM6AP51674 278 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms