RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KCNK7Q9Y2U2 307 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 TRBV5-5A0A0J9YX44 114 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 LILRA1O75019 489 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 RAB6AP20340 208 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 RAB7AP51149 207 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ELP2Q6IA86 826 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 NEU4Q8WWR8 484 aaPredicted RBP7.85□□□□□ -1.15
VPS39-205ENST00000562258 MARVELD3Q96A59 401 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 SNX22Q96L94 193 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 MTCH1Q9NZJ7 389 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 TRBV23-1A0A0A0MS06 115 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 DVL1O14640 695 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 NDUFA2O43678 99 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 FOXH1O75593 365 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 C1QL1O75973 258 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 CST7O76096 145 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 HRASP01112 189 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 CCL3L1P16619 93 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 FPR2P25090 351 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ERVFRD-1P60508 538 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 BTG1P62324 171 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 KCNMB1Q16558 191 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ECSCRQ19T08 205 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 NRN1LQ496H8 165 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 GAPTQ8N292 157 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 ITPKCQ96DU7 683 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 C20orf24Q9BUV8 137 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 FBXO7Q9Y3I1 522 aa7.85□□□□□ -1.15
VPS39-205ENST00000562258 PPYP01298 95 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 IGHV1-46P01743 117 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 THBDP07204 575 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 OR5G3P0C626 314 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 OR8U8P0C7N1 319 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 THNSL2Q86YJ6 484 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 PXT1Q8NFP0 134 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 PCNPQ8WW12 178 aaKnown RBP7.84□□□□□ -1.15
VPS39-205ENST00000562258 ERGIC1Q969X5 290 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 TMEM230Q96A57 120 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 HARBI1Q96MB7 349 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 EIF5A2Q9GZV4 153 aaKnown RBP7.84□□□□□ -1.15
VPS39-205ENST00000562258 SLC25A31Q9H0C2 315 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 ATPIF1Q9UII2 106 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 ZFP92A6NM28 416 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 SOX15O60248 233 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 IFNA7P01567 189 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 MMP7P09237 267 aaPredicted RBP7.84□□□□□ -1.15
VPS39-205ENST00000562258 ETV6P41212 452 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 SUB1P53999 127 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS39-205ENST00000562258 SLC7A5P1Q8MH63 180 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 OR13C8Q8NGS7 320 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 NRGNQ92686 78 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 AIFM2Q9BRQ8 373 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 AMMECR1Q9Y4X0 333 aaPredicted RBP7.84□□□□□ -1.15
VPS39-205ENST00000562258 RPL36A-HNRNPH2H7BZ11 118 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 LIPFP07098 398 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 PSG2P11465 335 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 CD24P25063 80 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 ECI1P42126 302 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 CCDC190Q86UF4 302 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 ABHD12Q8N2K0 398 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 ZNF525Q8N782 197 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 WDR31Q8NA23 367 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 DPF1Q92782 380 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 RASL11BQ9BPW5 248 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 CALYQ9NYX4 217 aa7.84□□□□□ -1.15
VPS39-205ENST00000562258 IGHV3-21A0A0B4J1V1 117 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 A0A0U1RQK1 487 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 SHISA3A0PJX4 238 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 ZNF320A2RRD8 509 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 E7EQL1 145 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 NDUFS7O75251 213 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MED6O75586 246 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 CEACAM4O75871 244 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 OR5AC1P0C628 307 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 TBPP20226 339 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 DTYMKP23919 212 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 CEACAM8P31997 349 aaPredicted RBP7.83□□□□□ -1.16
VPS39-205ENST00000562258 TMEM33P57088 247 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 HLA-DRB3P79483 266 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 Q8NA96 180 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 TMEM229BQ8NBD8 167 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 ZNF596Q8TC21 504 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 CD300LFQ8TDQ1 290 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MOB3AQ96BX8 217 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MISP3Q96FF7 219 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 PKIBQ9C010 78 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 TAS2R3Q9NYW6 316 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 BOLA1Q9Y3E2 137 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 K7N7A8 449 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 TMEM128Q5BJH2 165 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 TRAT1Q6PIZ9 186 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MARS2Q96GW9 593 aaKnown RBP7.83□□□□□ -1.16
VPS39-205ENST00000562258 DDOQ99489 341 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 SSBP3Q9BWW4 388 aaPredicted RBP7.83□□□□□ -1.16
VPS39-205ENST00000562258 MIXL1Q9H2W2 232 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 MED12LQ86YW9 2145 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 HTR1DP28221 377 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 ELLP55199 621 aaPredicted RBP7.83□□□□□ -1.16
VPS39-205ENST00000562258 HBG1P69891 147 aa7.83□□□□□ -1.16
VPS39-205ENST00000562258 HBG2P69892 147 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms