RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 C17orf107Q6ZR85 190 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 WDR86Q86TI4 376 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 RELL2Q8NC24 303 aaPredicted RBP6.34□□□□□ -1.39
VPS39-204ENST00000561818 OR11H4Q8NGC9 324 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 OR52M1Q8NGK5 317 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 FAM222BQ8WU58 562 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 SECTM1Q8WVN6 248 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 C14orf79Q96F83 325 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 RRNAD1Q96FB5 475 aaKnown RBP6.34□□□□□ -1.39
VPS39-204ENST00000561818 WDR89Q96FK6 387 aaPredicted RBP6.34□□□□□ -1.39
VPS39-204ENST00000561818 SDSLQ96GA7 329 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ADTRPQ96IZ2 230 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 C18orf12Q96KH6 178 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 CNTNAP3BQ96NU0 1288 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 C1QTNF6Q9BXI9 259 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 CNTNAP3Q9BZ76 1288 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 SHARPINQ9H0F6 387 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 GAL3ST2Q9H3Q3 398 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ZNF665Q9H7R5 613 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 TAF9BQ9HBM6 251 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ZC4H2Q9NQZ6 224 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 COA4Q9NYJ1 87 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 GAB2Q9UQC2 676 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 PPP1R3CQ9UQK1 317 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 hADV38S2A0JD32 116 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RNF222A6NCQ9 220 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 F5H0A9 414 aaPredicted RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 K7EM74 188 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 K7N7A8 449 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 SIRPB1O00241 398 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 WRBO00258 174 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 HSPB6O14558 160 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RBFOX2O43251 390 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS39-204ENST00000561818 SOX15O60248 233 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 YPEL1O60688 119 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 LILRA1O75019 489 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 LHBP01229 141 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 SCTP09683 121 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 APOBEC3AP31941 199 aaPredicted RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 CCKARP32238 428 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 HTR2BP41595 481 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 P2RX3P56373 397 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 TAS2R30P59541 319 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 SNRPD2P62316 118 aaKnown RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 MRPS11P82912 194 aaKnown RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 DAZAP2Q15038 168 aaPredicted RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 ANKRD55Q3KP44 614 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 DMRTC1Q5HYR2 192 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 NCMAPQ5T1S8 102 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 DCAF12L2Q5VW00 463 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 GGNBP1Q5YKI7 109 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 PCSK4Q6UW60 755 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 Q6ZR03 302 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 TBC1D26Q86UD7 250 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 WFDC8Q8IUA0 241 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 PDZD9Q8IXQ8 264 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 OR8H3Q8N146 312 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RNASE11Q8TAA1 199 aaKnown RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 CA5BP1Q8WTZ4 195 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 IL1F10Q8WWZ1 152 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MAFIPQ8WZ33 124 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MSI2Q96DH6 328 aaKnown RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 CIB3Q96Q77 187 aaPredicted RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 YPEL2Q96QA6 119 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RAB40CQ96S21 281 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 PRORYQ9H606 182 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 SAP30LQ9HAJ7 183 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MSL2Q9HCI7 577 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 DYNLRB1Q9NP97 96 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 KCNJ16Q9NPI9 418 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 TAS2R3Q9NYW6 316 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MBD2Q9UBB5 411 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 OR14J1Q9UGF5 321 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 PRELID3BQ9Y3B1 194 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RNF115Q9Y4L5 304 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MMP24Q9Y5R2 645 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 POMT1Q9Y6A1 747 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 RTTNQ86VV8 2226 aa6.33□□□□□ -1.4
VPS39-204ENST00000561818 MAP1BP46821 2468 aaKnown RBP6.33□□□□□ -1.4
VPS39-204ENST00000561818 PTPRQQ9UMZ3 2332 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 DMXL1Q9Y485 3027 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 PIEZO1Q92508 2521 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 IGKV1D-8A0A087WSZ0 117 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 TRAV14DV4A0A0A6YYC5 116 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 ODAMA1E959 279 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 ZSCAN5BA6NJL1 495 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 ZNF729A6NN14 1252 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 F8VVB4 439 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 F8VWA3 439 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 SMLR1H3BR10 107 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 LGALS8O00214 317 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 CCL21O00585 134 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 TOR1AO14656 332 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 HMGB3O15347 200 aaKnown RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 ST8SIA5O15466 376 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 TSPAN9O75954 239 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 SIX6O95475 246 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 IGHV1-46P01743 117 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 HOXB5P09067 269 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 OR4A8P0C604 315 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms