RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 OR10V1Q8NGI7 309 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 GNPNAT1Q96EK6 184 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-206ENST00000558338 TLNRD1Q9H1K6 362 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 TMEM231Q9H6L2 316 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 C19orf12Q9NSK7 152 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 LIN7CQ9NUP9 197 aaKnown RBP6.18□□□□□ -1.42
VPS13C-206ENST00000558338 IL36RNQ9UBH0 155 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 CACFD1Q9UGQ2 172 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 ZDHHC8Q9ULC8 765 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 R4GN57 208 aa6.18□□□□□ -1.42
VPS13C-206ENST00000558338 IGKV1D-13A0A0B4J2D9 117 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IGKV1-6A0A0C4DH72 117 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 A0A1B0GW64 132 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ATP6V1G2-DDX39BF2Z307 99 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 HS3ST1O14792 307 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SH2D1BO14796 132 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SIGLEC5O15389 551 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SSSCA1O60232 199 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PGLYRP1O75594 196 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 TSPAN9O75954 239 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 DFFBO76075 338 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SERPINE2P07093 398 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IGKV1-13P0DP09 117 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PAX6P26367 422 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 CD80P33681 288 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ARHGDIBP52566 201 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 RPL23AP62750 156 aaKnown RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SRSF3P84103 164 aaKnown RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ID3Q02535 119 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF324BQ6AW86 544 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 Q6P435 159 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PCSK4Q6UW60 755 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 DPPA3Q6W0C5 159 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF497Q6ZNH5 498 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 Q6ZT83 130 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 STX12Q86Y82 276 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 RNASE11Q8TAA1 199 aaKnown RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 RDH5Q92781 318 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 LSM10Q969L4 123 aaKnown RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 WFDC1Q9HC57 220 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 CCL28Q9NRJ3 127 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PRELID3BQ9Y3B1 194 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 TRAV17A0A0B4J275 112 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 CDRT15L2A8MXV6 281 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 NXPH2O95156 264 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 OR8U9P0C7N5 309 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PGA5P0DJD9 388 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 GLI4P10075 376 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IGHV1-2P23083 117 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IDH3GP51553 393 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 RAB2AP61019 212 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ERVK11-1P61568 191 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 POLR2GP62487 172 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13C-206ENST00000558338 MZT1Q08AG7 82 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF146Q15072 292 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 GUK1Q16774 197 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 HFEQ30201 348 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IGFL2Q6UWQ7 119 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 FAM214BQ7L5A3 538 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 PIP4P1Q86T03 277 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 C17orf78Q8N4C9 275 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 TMEM252Q8N6L7 170 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 OR8U1Q8NH10 309 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SARAFQ96BY9 339 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF488Q96MN9 340 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 RAB40CQ96S21 281 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 OR51B6Q9H340 312 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 SMCO4Q9NRQ5 59 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 TAAR3PQ9P1P4 343 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 MLXQ9UH92 298 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 TRAPPC2LQ9UL33 140 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 FAM96BQ9Y3D0 163 aa6.17□□□□□ -1.42
VPS13C-206ENST00000558338 IGSF23A1L1A6 192 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 FAM24AA6NFZ4 105 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 FAM157AC9JC47 383 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-206ENST00000558338 K7N7A8 449 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 SLC33A1O00400 549 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-206ENST00000558338 AGPAT2O15120 278 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 OR2H2O95918 312 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 HBE1P02100 147 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 CEACAM1P13688 526 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 CBR1P16152 277 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 COX5AP20674 150 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 NPBWR1P48145 328 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 NHLH2Q02577 135 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 GUSBP1Q15486 140 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 MSMO1Q15800 293 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 RNFT1Q5M7Z0 435 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 SPATA46Q5T0L3 261 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 WDR73Q6P4I2 378 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 SUMF1Q8NBK3 374 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 HSD17B11Q8NBQ5 300 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 SCCPDHQ8NBX0 429 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 OR1J1Q8NGS3 322 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 SLC25A40Q8TBP6 338 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 BSCL2Q96G97 398 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-206ENST00000558338 TRIB1Q96RU8 372 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 ATP5SQ99766 215 aa6.16□□□□□ -1.42
VPS13C-206ENST00000558338 OR2J1Q9GZK6 312 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms