RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 DNAJB11Q9UBS4 358 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 PCNX1Q96RV3 2341 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 POLEQ07864 2286 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 C3orf80F5H4A9 247 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 ZG16O60844 167 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 GATA4P43694 442 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 HMGN3Q15651 99 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 C4orf17Q53FE4 359 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 LINC01560Q8TB33 94 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 DCUN1D4Q92564 292 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 OR10C1Q96KK4 312 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 DNTTIP1Q9H147 329 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 ZFP57Q9NU63 452 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 GSKIPQ9P0R6 139 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 ABCD4O14678 606 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 SPRY3O43610 288 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 KALRNO60229 2985 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 PSPNO60542 156 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 SMCO1Q147U7 214 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 GGNBP1Q5YKI7 109 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 PRSS54Q6PEW0 395 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 TRAT1Q6PIZ9 186 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 LDLRAD3Q86YD5 345 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 OR11L1Q8NGX0 322 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 ERGIC1Q969X5 290 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 LRRC46Q96FV0 321 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 DIRC2Q96SL1 478 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 IL19Q9UHD0 177 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 TMED3Q9Y3Q3 217 aa14.16□□□□□ -0.14
LDLR-206ENST00000557958 HEATR1Q9H583 2144 aaKnown RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 NBASA2RRP1 2371 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 SMG1Q96Q15 3661 aaKnown RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 PRR14LQ5THK1 2151 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 OOEPA6NGQ2 149 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 RLN2P04090 185 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 THBDP07204 575 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 ZP3P21754 424 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 CEBPDP49716 269 aaPredicted RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 LUMP51884 338 aaPredicted RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 UBA52P62987 128 aaKnown RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 SP6Q3SY56 376 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 ZNF818PQ6ZRF7 136 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 GLYATL2Q8WU03 294 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 RNASE6Q93091 150 aaKnown RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 TMEM222Q9H0R3 208 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 TAF9BQ9HBM6 251 aa14.15□□□□□ -0.14
LDLR-206ENST00000557958 UBE2J1Q9Y385 318 aaPredicted RBP14.15□□□□□ -0.14
LDLR-206ENST00000557958 BCL2L11O43521 198 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 GABRA2P47869 451 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 TNFAIP6P98066 277 aaPredicted RBP14.14□□□□□ -0.15
LDLR-206ENST00000557958 PAX5Q02548 391 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 COL10A1Q03692 680 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 BSPH1Q075Z2 132 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 SMUG1Q53HV7 270 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 TBC1D26Q86UD7 250 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 MOGAT3Q86VF5 341 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 PRR18Q8N4B5 295 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 OR10V1Q8NGI7 309 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 GALMQ96C23 342 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 MSI2Q96DH6 328 aaKnown RBP14.14□□□□□ -0.15
LDLR-206ENST00000557958 NDRG3Q9UGV2 375 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 IGKV1D-13A0A0B4J2D9 117 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 DUXBA0A1W2PPF3 345 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 MPTX1A8MV57 137 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 IGKV1-13P0DP09 117 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 LYL1P12980 280 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 PRDX2P32119 198 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 S100A10P60903 97 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 ZNF843Q8N446 348 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 SCARB1Q8WTV0 552 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 ITLN1Q8WWA0 313 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 C18orf12Q96KH6 178 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 REG4Q9BYZ8 158 aa14.14□□□□□ -0.15
LDLR-206ENST00000557958 ESRP2Q9H6T0 727 aaKnown RBP14.14□□□□□ -0.15
LDLR-206ENST00000557958 RBM7Q9Y580 266 aaKnown RBP14.14□□□□□ -0.15
LDLR-206ENST00000557958 RNF222A6NCQ9 220 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 DPRXA6NFQ7 191 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 MFSD2BA6NFX1 497 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 HSD17B6O14756 317 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 OR3A1P47881 315 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 IL15RAQ13261 267 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 KRBOX4Q5JUW0 171 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 BVESQ8NE79 360 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 NINJ1Q92982 152 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 AKR1E2Q96JD6 320 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 TP53RKQ96S44 253 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 SPIN2AQ99865 258 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 SPIN2BQ9BPZ2 258 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 CCL28Q9NRJ3 127 aa14.13□□□□□ -0.15
LDLR-206ENST00000557958 IGHV1-46P01743 117 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 PSG2P11465 335 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 IL2RGP31785 369 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 TAGLNQ01995 201 aaKnown RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 RAB32Q13637 225 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 MEX3BQ6ZN04 569 aaKnown RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 ZNF695Q8IW36 515 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 PCNPQ8WW12 178 aaKnown RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 TMEM56Q96MV1 263 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 ARPC5LQ9BPX5 153 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 RNF126Q9BV68 326 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms