RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 CROCCP3Q8IVE0 287 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 SLC25A46Q96AG3 418 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 SLC25A38Q96DW6 304 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 TAF9BQ9HBM6 251 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 MBNL3Q9NUK0 354 aaKnown RBP11.64□□□□□ -0.55
USP3-205ENST00000557884 KCNIP1Q9NZI2 227 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 ETV7Q9Y603 341 aa11.64□□□□□ -0.55
USP3-205ENST00000557884 SDCBPO00560 298 aaPredicted RBP11.63□□□□□ -0.55
USP3-205ENST00000557884 TOR1AO14656 332 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 NAPSAO96009 420 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 HIST1H1DP16402 221 aaKnown RBP11.63□□□□□ -0.55
USP3-205ENST00000557884 CD34P28906 385 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 UBA52P62987 128 aaKnown RBP11.63□□□□□ -0.55
USP3-205ENST00000557884 KRTAP24-1Q3LI83 254 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 DYNAPQ8N1N2 210 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 OR10V1Q8NGI7 309 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 OR4P4Q8NGL7 312 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 CMSS1Q9BQ75 279 aaKnown RBP11.63□□□□□ -0.55
USP3-205ENST00000557884 DCSTAMPQ9H295 470 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 PRDM13Q9H4Q3 707 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 C12orf4Q9NQ89 552 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 ABRACLQ9P1F3 81 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 KCNK7Q9Y2U2 307 aa11.63□□□□□ -0.55
USP3-205ENST00000557884 A0A087X0M5 115 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 A0A1B0GX30 115 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 A0A1W2PPE3 182 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 RNF212BA8MTL3 300 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 F2RL2O00254 374 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 MFNGO00587 321 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 CD3GP09693 182 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 MRPS15P82914 257 aaKnown RBP11.62□□□□□ -0.55
USP3-205ENST00000557884 SSX2Q16385 188 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 TRAT1Q6PIZ9 186 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 LDLRAD3Q86YD5 345 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 IZUMO1Q8IYV9 350 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 OR10A7Q8NGE5 316 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 ZNF596Q8TC21 504 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 SSMEM1Q8WWF3 244 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 GFOD1Q9NXC2 390 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 GNG12Q9UBI6 72 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 ELF5Q9UKW6 265 aaPredicted RBP11.62□□□□□ -0.55
USP3-205ENST00000557884 SPATA2Q9UM82 520 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 PSG11Q9UQ72 335 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 TBL2Q9Y4P3 447 aaKnown RBP11.62□□□□□ -0.55
USP3-205ENST00000557884 HILPDAQ9Y5L2 63 aa11.62□□□□□ -0.55
USP3-205ENST00000557884 TRIM77I1YAP6 450 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 IGLV1-47P01700 117 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 HTR1DP28221 377 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 PRRX1P54821 245 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 SCAND1P57086 179 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 LOXL3P58215 753 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 ARFRP1Q13795 201 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 GNMTQ14749 295 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 SPCS2Q15005 226 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 HMGN3Q15651 99 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 CDNFQ49AH0 187 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 MINOS1Q5TGZ0 78 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 ZNF880Q6PDB4 577 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 MOB1BQ7L9L4 216 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.61□□□□□ -0.55
USP3-205ENST00000557884 DTX3Q8N9I9 347 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 BEND2Q8NDZ0 799 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 OR52L2PQ8NGH6 319 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 OR9G1Q8NH87 305 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 RIMS4Q9H426 269 aaPredicted RBP11.61□□□□□ -0.55
USP3-205ENST00000557884 RAB9BQ9NP90 201 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 MINOS1-NBL1R4GNA1 71 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 COL6A5A8TX70 2615 aa11.61□□□□□ -0.55
USP3-205ENST00000557884 TRBV6-6A0A0A6YYG2 114 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 TMEM235A6NFC5 223 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 J3QR06 171 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 TMEM127O75204 238 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 IER3P46695 156 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 RORCP51449 518 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 HLA-DRB3P79483 266 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 LRRC75BQ2VPJ9 315 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 HLA-DRB5Q30154 266 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 KRTAP21-3Q3LHN1 58 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 SAMD12Q8N8I0 201 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 OR52M1Q8NGK5 317 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 OR10X1Q8NGY0 326 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 RAB2BQ8WUD1 216 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 IL1F10Q8WWZ1 152 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 MAFIPQ8WZ33 124 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 TMEM158Q8WZ71 300 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 PHF21AQ96BD5 680 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 MALSU1Q96EH3 234 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 MDFIQ99750 246 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 SSX3Q99909 188 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 CHIAQ9BZP6 476 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 MMP28Q9H239 520 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 Q9N2K0 584 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 OR2S2Q9NQN1 319 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 DPM3Q9P2X0 92 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 COMMD3Q9UBI1 195 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 ZNF230Q9UIE0 474 aaPredicted RBP11.6□□□□□ -0.55
USP3-205ENST00000557884 KIAA2026Q5HYC2 2103 aa11.6□□□□□ -0.55
USP3-205ENST00000557884 DSCAML1Q8TD84 2053 aa11.59□□□□□ -0.55
USP3-205ENST00000557884 TRAV18A0A075B6X5 111 aa11.59□□□□□ -0.55
USP3-205ENST00000557884 BTBD17A6NE02 478 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms