RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ETV3LQ6ZN32 361 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 C8orf86Q6ZUL3 223 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 TGIF2LXQ8IUE1 241 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 STPG2Q8N412 459 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 PACRGLQ8N7B6 248 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 EAF1Q96JC9 268 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-235ENST00000557740 PGLYRP3Q96LB9 341 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 MCRIP2Q9BUT9 160 aaKnown RBP11.56□□□□□ -0.56
SHMT2-235ENST00000557740 C8orf4Q9NR00 106 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 ZFP57Q9NU63 452 aa11.56□□□□□ -0.56
SHMT2-235ENST00000557740 LIN7CQ9NUP9 197 aaKnown RBP11.56□□□□□ -0.56
SHMT2-235ENST00000557740 RCC2Q9P258 522 aaKnown RBP11.56□□□□□ -0.56
SHMT2-235ENST00000557740 TRBV5-7A0A0A0MS05 114 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 A0A1W2PPK0 400 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 EFCAB10A6NFE3 127 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 C12orf77C9JDV5 145 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 AP4M1O00189 453 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 MYL12BO14950 172 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 TXNL1O43396 289 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 MAS1P04201 325 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 HOXD3P31249 432 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-235ENST00000557740 GPR12P47775 334 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 THBS3P49746 956 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 KRTAP10-11P60412 298 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 RPS11P62280 158 aaKnown RBP eCLIP11.55□□□□□ -0.56
SHMT2-235ENST00000557740 TMEM30BQ3MIR4 351 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 SYT6Q5T7P8 510 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-235ENST00000557740 RAB12Q6IQ22 244 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 C18orf65Q6ZTR6 163 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 PRR18Q8N4B5 295 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 DHRSXQ8N5I4 330 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 OR4K15Q8NH41 348 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 RTN4IP1Q8WWV3 396 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-235ENST00000557740 MRPS24Q96EL2 167 aaKnown RBP11.55□□□□□ -0.56
SHMT2-235ENST00000557740 GON7Q9BXV9 100 aa11.55□□□□□ -0.56
SHMT2-235ENST00000557740 RRP9O43818 475 aaKnown RBP11.54□□□□□ -0.56
SHMT2-235ENST00000557740 CRTAPO75718 401 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-235ENST00000557740 MOSP00540 346 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 MGMTP16455 207 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 CD1BP29016 333 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 MYCNOSP40205 109 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 EGFEM1PQ0D2K5 195 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 DEFB121Q5J5C9 76 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 FAM53AQ6NSI3 398 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-235ENST00000557740 TEX38Q6PEX7 206 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 TRAT1Q6PIZ9 186 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 SLC25A48Q6ZT89 311 aaKnown RBP11.54□□□□□ -0.56
SHMT2-235ENST00000557740 ZNF695Q8IW36 515 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 C8orf59Q8N0T1 100 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-235ENST00000557740 Q8N6K4 173 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 NKAIN3Q8N8D7 197 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 ZNF485Q8NCK3 441 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 OR10V1Q8NGI7 309 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 THRSPQ92748 146 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 GGHQ92820 318 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 RASL11BQ9BPW5 248 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 SELENOIQ9C0D9 397 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 ABCG5Q9H222 651 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 BANF2Q9H503 90 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 PEX16Q9Y5Y5 336 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 DNAH3Q8TD57 4116 aa11.54□□□□□ -0.56
SHMT2-235ENST00000557740 FAM90A10PA6NDY2 464 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 FAM90A7PA6NKC0 464 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 FAM90A23PA8MXZ1 464 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 SLC31A2O15432 143 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 CA11O75493 328 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 HBZP02008 142 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 MAPK3P27361 379 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-235ENST00000557740 CAPGP40121 348 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 ADARB1P78563 741 aaKnown RBP11.53□□□□□ -0.56
SHMT2-235ENST00000557740 DOC2BQ14184 412 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 CXorf66Q5JRM2 361 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-235ENST00000557740 CDH26Q8IXH8 852 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 Q8N9W7 124 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 TMEM104Q8NE00 496 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 OR8H1Q8NGG4 311 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 TFAP2CQ92754 450 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 ST6GALNAC6Q969X2 333 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 DERL3Q96Q80 235 aa11.53□□□□□ -0.56
SHMT2-235ENST00000557740 CNOT2Q9NZN8 540 aaKnown RBP11.53□□□□□ -0.56
SHMT2-235ENST00000557740 WI2-2373I1.2A0A1W2PRP0 233 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 LINC01548A6NM66 108 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 CELP19835 753 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 FUT3P21217 361 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 ZNF137PP52743 207 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 WNT4P56705 351 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 RAB25P57735 213 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 RCN1Q15293 331 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 PNLIPRP3Q17RR3 467 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 UNQ9370/PRO34162Q6UXP9 181 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 AHSA2Q719I0 299 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 ZNF439Q8NDP4 499 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 OR1L1Q8NH94 360 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 Q96M66 194 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 S1PR3Q99500 378 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 P2RX4Q99571 388 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 KCNIP1Q9NZI2 227 aa11.52□□□□□ -0.57
SHMT2-235ENST00000557740 UBE2QL1A1L167 161 aa11.51□□□□□ -0.57
SHMT2-235ENST00000557740 RPLP1P05386 114 aaKnown RBP11.51□□□□□ -0.57
SHMT2-235ENST00000557740 GLAP06280 429 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms