RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 HIST1H2AAQ96QV6 131 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 STRADBQ9C0K7 418 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 CDH20Q9HBT6 801 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 ABCA7Q8IZY2 2146 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 EML6Q6ZMW3 1958 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 FAM90A26D6RGX4 464 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 MDH2P40926 338 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 TCEAL6Q6IPX3 200 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 MOB1BQ7L9L4 216 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 YRDCQ86U90 279 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 TGIF2LYQ8IUE0 185 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 RNASE11Q8TAA1 199 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 RNASEH2CQ8TDP1 164 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 SAP25Q8TEE9 199 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 S100PBPQ96BU1 408 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 SRD5A3Q9H8P0 318 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 NAT8Q9UHE5 227 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 TNRC6BQ9UPQ9 1833 aaKnown RBP13.89□□□□□ -0.19
SHMT2-231ENST00000557433 IGKV3D-15A0A087WSY6 115 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 SMCO3A2RU48 225 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 ZFP92A6NM28 416 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 CD300LBA8K4G0 201 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 DVL1O14640 695 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF295-AS1Q8N0V1 137 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 CPEB3Q8NE35 698 aaKnown RBP13.89□□□□□ -0.19
SHMT2-231ENST00000557433 OR10A7Q8NGE5 316 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 PSMF1Q92530 271 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 PYGO2Q9BRQ0 406 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 PSENENQ9NZ42 101 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 MTCH1Q9NZJ7 389 aa13.89□□□□□ -0.19
SHMT2-231ENST00000557433 ASCC3Q8N3C0 2202 aaKnown RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 APLNRP35414 380 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 GPM6AP51674 278 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 ZFP36L1Q07352 338 aaKnown RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 TMEM183AQ8IXX5 376 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 OR10V1Q8NGI7 309 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 PACRGQ96M98 296 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF665Q9H7R5 613 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 OR14J1Q9UGF5 321 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 REV3LO60673 3130 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 OR5B21A6NL26 309 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 FOLR3P41439 243 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 TMEM267Q0VDI3 215 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 COA6Q5JTJ3 125 aaKnown RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 CYP2G1PQ6ZSU1 146 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 C14orf144Q96I85 54 aa13.88□□□□□ -0.19
SHMT2-231ENST00000557433 LIN7CQ9NUP9 197 aaKnown RBP13.88□□□□□ -0.19
SHMT2-231ENST00000557433 A0A0G2JRQ6 117 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 SS18L1O75177 396 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-231ENST00000557433 PSG2P11465 335 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 FABP4P15090 132 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 PAX1P15863 534 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 DDTP30046 118 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 CENPVQ7Z7K6 275 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF573Q86YE8 665 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 RSG1Q9BU20 258 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 WDR61Q9GZS3 305 aaKnown RBP13.87□□□□□ -0.19
SHMT2-231ENST00000557433 FGF23Q9GZV9 251 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF576Q9H609 170 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 CACNG5Q9UF02 275 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 MPC1Q9Y5U8 109 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 MED12Q93074 2177 aa13.87□□□□□ -0.19
SHMT2-231ENST00000557433 RTTNQ86VV8 2226 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 CCDC163A0A0D9SF12 145 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 MAP1LC3B2A6NCE7 125 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 TMEM250H0YL14 139 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 MKRN2OSH3BPM6 223 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 TNFSF12O43508 249 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 MRPL33O75394 65 aaKnown RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF726P1Q15940 193 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF468Q5VIY5 522 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 GFI1BQ5VTD9 330 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 WDR25Q64LD2 544 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 LCN15Q6UWW0 184 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 LILRB2Q8N423 598 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 ZNF845Q96IR2 970 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 HIST1H2BLQ99880 126 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 PKIBQ9C010 78 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 MAP1LC3BQ9GZQ8 125 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 SMOC1Q9H4F8 434 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 BRWD1Q9NSI6 2320 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 TNRC6AQ8NDV7 1962 aaKnown RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 LRRC3CA6NJW4 275 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 RNF212BA8MTL3 300 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 CEBPZOSA8MTT3 80 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 HLA-HP01893 362 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 RD3LP0DJH9 198 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 FGF7P21781 194 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 GAMTQ14353 236 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 JOSD1Q15040 202 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 TMEM241Q24JQ0 296 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 LYSMD4Q5XG99 296 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 NCR3LG1Q68D85 454 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 WNT16Q9UBV4 365 aa13.86□□□□□ -0.19
SHMT2-231ENST00000557433 ERRFI1Q9UJM3 462 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-231ENST00000557433 H3BP45 60 aa13.85□□□□□ -0.19
SHMT2-231ENST00000557433 NXPH3O95157 252 aa13.85□□□□□ -0.19
SHMT2-231ENST00000557433 MBP02144 154 aa13.85□□□□□ -0.19
SHMT2-231ENST00000557433 ARR3P36575 388 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms