RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 TAF9BQ9HBM6 251 aa14.2□□□□□ -0.14
SHMT2-225ENST00000556798 TNFRSF19Q9NS68 423 aa14.2□□□□□ -0.14
SHMT2-225ENST00000556798 SPATA2Q9UM82 520 aa14.2□□□□□ -0.14
SHMT2-225ENST00000556798 A0A087X0M5 115 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 A0A0A6YYJ9 748 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 A0A1B0GX30 115 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 SDCBPO00560 298 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-225ENST00000556798 HOXA3O43365 443 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-225ENST00000556798 HBZP02008 142 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 FBP1P09467 338 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 CD34P28906 385 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 GNG10P50151 68 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 SPCS2Q15005 226 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 TRAT1Q6PIZ9 186 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 Q6YL49 198 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 OR4P4Q8NGL7 312 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 RAB2BQ8WUD1 216 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 JMJD8Q96S16 334 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 PRDM13Q9H4Q3 707 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 C12orf4Q9NQ89 552 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 KCNIP1Q9NZI2 227 aa14.19□□□□□ -0.14
SHMT2-225ENST00000556798 ELF5Q9UKW6 265 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-225ENST00000556798 A0A1W2PPE3 182 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 F2RL2O00254 374 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 TOR1AO14656 332 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 SPINT2O43291 252 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 TMEM127O75204 238 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 CD3GP09693 182 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 RORCP51449 518 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 LOXL3P58215 753 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 HMGN3Q15651 99 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 PLA1AQ53H76 456 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 ZNF880Q6PDB4 577 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 LDLRAD3Q86YD5 345 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 DYNAPQ8N1N2 210 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 OR10A7Q8NGE5 316 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 OR10V1Q8NGI7 309 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 RIMS4Q9H426 269 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-225ENST00000556798 GFOD1Q9NXC2 390 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 PSG11Q9UQ72 335 aa14.18□□□□□ -0.14
SHMT2-225ENST00000556798 TBL2Q9Y4P3 447 aaKnown RBP14.18□□□□□ -0.14
SHMT2-225ENST00000556798 TRBV6-6A0A0A6YYG2 114 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 NOL3O60936 208 aaKnown RBP14.17□□□□□ -0.14
SHMT2-225ENST00000556798 IGLV1-47P01700 117 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 IGHV4-59P01825 116 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 TMBIM6P55061 237 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 UBA52P62987 128 aaKnown RBP14.17□□□□□ -0.14
SHMT2-225ENST00000556798 MRPS15P82914 257 aaKnown RBP14.17□□□□□ -0.14
SHMT2-225ENST00000556798 ARFRP1Q13795 201 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 GNMTQ14749 295 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 SLC9A3R2Q15599 337 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 MOB1BQ7L9L4 216 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 IZUMO1Q8IYV9 350 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 SAMD12Q8N8I0 201 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 DTX3Q8N9I9 347 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 OR9G1Q8NH87 305 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 ZNF596Q8TC21 504 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 COMMD3Q9UBI1 195 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 GNG12Q9UBI6 72 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 HILPDAQ9Y5L2 63 aa14.17□□□□□ -0.14
SHMT2-225ENST00000556798 TMEM235A6NFC5 223 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 SERPINE3A8MV23 424 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 SCGNO76038 276 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 HLA-DRB3P79483 266 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 SSX2Q16385 188 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 HLA-DRB5Q30154 266 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 KRTAP24-1Q3LI83 254 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 CDNFQ49AH0 187 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 UBE2NLQ5JXB2 153 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 BEND2Q8NDZ0 799 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 OR52L2PQ8NGH6 319 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 MAFIPQ8WZ33 124 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 PHF21AQ96BD5 680 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 ISOC1Q96CN7 298 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 KCTD12Q96CX2 325 aaKnown RBP14.16□□□□□ -0.14
SHMT2-225ENST00000556798 MMP28Q9H239 520 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 Q9N2K0 584 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 RAB9BQ9NP90 201 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 CEPT1Q9Y6K0 416 aa14.16□□□□□ -0.14
SHMT2-225ENST00000556798 FBN1P35555 2871 aaKnown RBP14.16□□□□□ -0.14
SHMT2-225ENST00000556798 TRAV18A0A075B6X5 111 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 H3BMQ9 156 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 J3QR06 171 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 FCGR3AP08637 254 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 HTR1DP28221 377 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 IER3P46695 156 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 PRRX1P54821 245 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 ZNF260Q3ZCT1 412 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 MINOS1Q5TGZ0 78 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 ZNF554Q86TJ5 538 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 OR52M1Q8NGK5 317 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 NUDCD2Q8WVJ2 157 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 IL1F10Q8WWZ1 152 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 BCL7BQ9BQE9 202 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 OR2S2Q9NQN1 319 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.15□□□□□ -0.14
SHMT2-225ENST00000556798 ZNF230Q9UIE0 474 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-225ENST00000556798 MINOS1-NBL1R4GNA1 71 aa14.15□□□□□ -0.14
SHMT2-225ENST00000556798 CCDC160A6NGH7 325 aa14.14□□□□□ -0.15
SHMT2-225ENST00000556798 BUB1B-PAK6H3BSN5 160 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms