RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RANBP3Q9H6Z4 567 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-219ENST00000555563 PITPNC1Q9UKF7 332 aa11.03□□□□□ -0.64
SHMT2-219ENST00000555563 SIGLEC9Q9Y336 463 aa11.03□□□□□ -0.64
SHMT2-219ENST00000555563 AMMECR1Q9Y4X0 333 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-219ENST00000555563 A0A0A6YYD4 124 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 A0A1W2PPE3 182 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 RCC1P18754 421 aaPredicted RBP11.02□□□□□ -0.65
SHMT2-219ENST00000555563 GALP22466 123 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 MYL9P24844 172 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 CD24P25063 80 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 LOXL3P58215 753 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 KCTD21Q4G0X4 260 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 HES5Q5TA89 166 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 C22orf42Q6IC83 251 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 SLC16A12Q6ZSM3 486 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 C6orf201Q7Z4U5 140 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 OR51D1Q8NGF3 324 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 SGMS2Q8NHU3 365 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 MRPL30Q8TCC3 161 aaKnown RBP11.02□□□□□ -0.65
SHMT2-219ENST00000555563 RPEQ96AT9 228 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 LPAR5Q9H1C0 372 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 GFOD1Q9NXC2 390 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 V9GY05 133 aa11.02□□□□□ -0.65
SHMT2-219ENST00000555563 IGHV3-43A0A0B4J1X8 118 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 TRAV1-2A0A0B4J238 106 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 OOSP1A8MZH6 123 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 HBZP02008 142 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 IGHV3-43DP0DP04 118 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 BRS3P32247 399 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 ARHGDIBP52566 201 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 MADCAM1Q13477 382 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 CCDC144NLQ6NUI1 221 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 TRAT1Q6PIZ9 186 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 PRR18Q8N4B5 295 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 OR52M1Q8NGK5 317 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 OR1L1Q8NH94 360 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 FAM3DQ96BQ1 224 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 CITED1Q99966 193 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 URM1Q9BTM9 101 aaKnown RBP11.01□□□□□ -0.65
SHMT2-219ENST00000555563 FAAP24Q9BTP7 215 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF702PQ9H963 129 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 MBNL3Q9NUK0 354 aaKnown RBP11.01□□□□□ -0.65
SHMT2-219ENST00000555563 FBLN5Q9UBX5 448 aa11.01□□□□□ -0.65
SHMT2-219ENST00000555563 A0A1W2PPI3 338 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 PDCD5O14737 125 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 SPINT2O43291 252 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 BLVRBP30043 206 aaPredicted RBP11□□□□□ -0.65
SHMT2-219ENST00000555563 MNDAP41218 407 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 KIR2DS4P43632 304 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 PSMD7P51665 324 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 EFNB2P52799 333 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 DIAPH2-AS1Q14236 149 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 HABP2Q14520 560 aaPredicted RBP11□□□□□ -0.65
SHMT2-219ENST00000555563 TMEM30BQ3MIR4 351 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 Q6ZPA2 131 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 OR10X1Q8NGY0 326 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 OR2T6Q8NHC8 308 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 TAF9BQ9HBM6 251 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 RAB9BQ9NP90 201 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 GNG12Q9UBI6 72 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 STEAP1Q9UHE8 339 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 STUB1Q9UNE7 303 aa11□□□□□ -0.65
SHMT2-219ENST00000555563 SMIM30A4D0T7 59 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 IFITM5A6NNB3 132 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 FOXI3A8MTJ6 420 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-219ENST00000555563 HSD17B6O14756 317 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 TIMM23O14925 209 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 LDLRAD4O15165 306 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 SLC31A2O15432 143 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 SOCS1O15524 211 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 RAB3BP20337 219 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 FGF9P31371 208 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-219ENST00000555563 PLA2G7Q13093 441 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 GNMTQ14749 295 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 NEDD8Q15843 81 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 C2orf76Q3KRA6 126 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 PRR31Q5SQ13 230 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 C5orf24Q7Z6I8 188 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 NR2C2APQ86WQ0 139 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 Q8N2B8 174 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 FAM89BQ8N5H3 189 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 C8orf31Q8N9H6 132 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF439Q8NDP4 499 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 OR10V1Q8NGI7 309 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 OR56B4Q8NH76 319 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 PLEKHJ1Q9NW61 149 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 TXNL4BQ9NX01 149 aaKnown RBP10.99□□□□□ -0.65
SHMT2-219ENST00000555563 KCNIP1Q9NZI2 227 aa10.99□□□□□ -0.65
SHMT2-219ENST00000555563 A0A0B4J203 849 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 TMEM272A0A1B0GTI8 110 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 NAPSAO96009 420 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 RAB7AP51149 207 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 Q3ZCU0 254 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 C16orf82Q7Z2V1 217 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 ZNF554Q86TJ5 538 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 OR8H3Q8N146 312 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 LINC00311Q8N616 119 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 DRAM1Q8N682 238 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 CFHR4Q92496 578 aa10.98□□□□□ -0.65
SHMT2-219ENST00000555563 OCSTAMPQ9BR26 566 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms