RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 LNP1A1A4G5 178 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 CD300LBA8K4G0 201 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF732B4DXR9 585 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 IGHV3-43DP0DP04 118 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 GDF1P27539 372 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 CDX1P47902 265 aaPredicted RBP12.6□□□□□ -0.39
HOXC11-202ENST00000546378 HLA-DRB3P79483 266 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 OR1A1Q9P1Q5 309 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 NUP210LQ5VU65 1888 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 TMEM131Q92545 1883 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 XKRY2A2RUG3 117 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 TP53I11O14683 189 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 WNT5AP41221 380 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 HMGN3Q15651 99 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 MRPL21Q7Z2W9 205 aaKnown RBP12.6□□□□□ -0.39
HOXC11-202ENST00000546378 C1orf87Q8N0U7 546 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 ABHD5Q8WTS1 349 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 IL22RA2Q969J5 263 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 IER2Q9BTL4 223 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 RBKSQ9H477 322 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 SLC39A9Q9NUM3 307 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF107Q9UII5 783 aaPredicted RBP12.6□□□□□ -0.39
HOXC11-202ENST00000546378 FZR1Q9UM11 496 aa12.6□□□□□ -0.39
HOXC11-202ENST00000546378 SRP19P09132 144 aaKnown RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 SLC35B1P78383 322 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 PSG4Q00888 419 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 MSI2Q96DH6 328 aaKnown RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 HIST1H2AAQ96QV6 131 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 IFNA10P01566 189 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 GRPP07492 148 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 DDTP30046 118 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 H3F3AP84243 136 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 ICAM4Q14773 271 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 CNN3Q15417 329 aaKnown RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 OR1F12Q8NHA8 337 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 PLEKHF2Q9H8W4 249 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 OTOGLQ3ZCN5 2332 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 TACC2O95359 2948 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 IGHV2-5P01817 119 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF133P52736 654 aaPredicted RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 LINC00696Q6ZRV3 163 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 AGBL5Q8NDL9 886 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 PP6455Q8WZ26 134 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 PSMF1Q92530 271 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 FAM103A1Q9BTL3 118 aaKnown RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 FOXD3Q9UJU5 478 aaPredicted RBP12.59□□□□□ -0.39
HOXC11-202ENST00000546378 PCNX2A6NKB5 2137 aa12.59□□□□□ -0.39
HOXC11-202ENST00000546378 GRIFINA4D1Z8 144 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 HOXA5P20719 270 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 OR8G1Q15617 311 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 SSX7Q7RTT5 188 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 MOB1AQ9H8S9 216 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 PATZ1Q9HBE1 687 aaKnown RBP12.58□□□□□ -0.4
HOXC11-202ENST00000546378 MED12LQ86YW9 2145 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 MED13Q9UHV7 2174 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 PPIHO43447 177 aaKnown RBP12.58□□□□□ -0.4
HOXC11-202ENST00000546378 DUSP3P51452 185 aaPredicted RBP12.58□□□□□ -0.4
HOXC11-202ENST00000546378 TLE4Q04727 773 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 BAXQ07812 192 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 SPINK14Q6IE38 97 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 OR51G1Q8NGK1 321 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 PISDQ9UG56 409 aa12.58□□□□□ -0.4
HOXC11-202ENST00000546378 AQP7P3A6NL99 342 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 A6NNC1 897 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 K7N7A8 449 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 PDCD6O75340 191 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 GAPDHP04406 335 aaKnown RBP12.57□□□□□ -0.4
HOXC11-202ENST00000546378 IL15RAQ13261 267 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 HES3Q5TGS1 186 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 RHBDD2Q6NTF9 364 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 PSENENQ9NZ42 101 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 IL17BQ9UHF5 180 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 TRAPPC2LQ9UL33 140 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 DMXL1Q9Y485 3027 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 ADGRG4Q8IZF6 3080 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 LILRA1O75019 489 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 THBS3P49746 956 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 LSM6P62312 80 aaKnown RBP12.57□□□□□ -0.4
HOXC11-202ENST00000546378 ARL6IP1Q15041 203 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 SPSB3Q6PJ21 355 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 Q6ZPA2 131 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 FAM185AQ8N0U4 392 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 OR10V1Q8NGI7 309 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 MVB12AQ96EY5 273 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 FOXB1Q99853 325 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 HES7Q9BYE0 225 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 SLC25A31Q9H0C2 315 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 CLN8Q9UBY8 286 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 TRAV34A0A0B4J273 112 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 TRAPPC2LH3BP13 241 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 CA6P23280 308 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 FAM189A2Q15884 450 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 ZNF100Q8IYN0 542 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 POMT1Q9Y6A1 747 aa12.57□□□□□ -0.4
HOXC11-202ENST00000546378 TNCP24821 2201 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 IL2RGP31785 369 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 C20orf204Q6ZNR8 217 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 Q6ZRM9 215 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 C16orf82Q7Z2V1 217 aa12.56□□□□□ -0.4
HOXC11-202ENST00000546378 OR5B12Q96R08 314 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms