RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR4A16Q8NH70 328 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 LRRC61Q9BV99 259 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 LYRM2Q9NU23 88 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 HS3ST3B1Q9Y662 390 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 LOC390937A0A1W2PQ73 354 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 SHISA7A6NL88 538 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 C11orf94C9JXX5 98 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 DEGS1O15121 323 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 SPINT2O43291 252 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 PDCD6O75340 191 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 PITX3O75364 302 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 TBC1D28Q2M2D7 210 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 H1FOOQ8IZA3 346 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-215ENST00000544547 ZADH2Q8N4Q0 377 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 TM4SF19Q96DZ7 209 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 PLA2G3Q9NZ20 509 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 TRDCB7Z8K6 153 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 SYNGR2O43760 224 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 SELLP14151 372 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 PAQR4Q8N4S7 273 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-215ENST00000544547 GINS3Q9BRX5 216 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 A0A096LPE4 126 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 A0A1W2PPZ6 126 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 TNFSF14O43557 240 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 EGR1P18146 543 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 WNT5AP41221 380 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 H2BFWTQ7Z2G1 175 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 PTPMT1Q8WUK0 201 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-215ENST00000544547 WFDC1Q9HC57 220 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 DNAJC4Q9NNZ3 241 aa12.4□□□□□ -0.42
LIMS1-215ENST00000544547 TRAV39A0A0B4J263 110 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 C2CD4DB7Z1M9 353 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF253O75346 499 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 CTXN2P0C2S0 81 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 FGF5P12034 268 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 LSM6P62312 80 aaKnown RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 FUT7Q11130 342 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 JOSD1Q15040 202 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 FDX2Q6P4F2 183 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 RBKSQ9H477 322 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 RPRMQ9NS64 109 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 FOXD3Q9UJU5 478 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 NCOR1O75376 2440 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 SIRPB1O00241 398 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 PLPPR2Q96GM1 343 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 DOCK11Q5JSL3 2073 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 IGSF23A1L1A6 192 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 EREGO14944 169 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 ISG15P05161 165 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 P2RY6Q15077 328 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 NUFIP2Q7Z417 695 aaKnown RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 DMRTC2Q8IXT2 367 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 DEFB123Q8N688 67 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 SPSB1Q96BD6 273 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 GNRHR2Q96P88 292 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 A0A1W2PQF6 199 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 DIRC3C9JPN6 131 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 HRASP01112 189 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 IER3P46695 156 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 SUPT4H1P63272 117 aaKnown RBP12.39□□□□□ -0.43
LIMS1-215ENST00000544547 SLC35B1P78383 322 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 BTNL3Q6UXE8 466 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF664Q8N3J9 261 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 TCTEX1D1Q8N7M0 179 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 CTHRC1Q96CG8 243 aa12.39□□□□□ -0.43
LIMS1-215ENST00000544547 LRRC3CA6NJW4 275 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 FOXS1O43638 330 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 HPRT1P00492 218 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 THBS3P49746 956 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF774Q6NX45 483 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 DEFB108BQ8NET1 73 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 SRD5A3Q9H8P0 318 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 PLXNA3P51805 1871 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 TRBV6-7A0A0A0MS04 114 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 IGHV2-5P01817 119 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 MEF2BQ02080 365 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-215ENST00000544547 MRPL37Q9BZE1 423 aaKnown RBP12.38□□□□□ -0.43
LIMS1-215ENST00000544547 PPP1R14DQ9NXH3 145 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 TRAF3IP2O43734 574 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-215ENST00000544547 DXOO77932 396 aaKnown RBP12.38□□□□□ -0.43
LIMS1-215ENST00000544547 AMBPP02760 352 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 GPM6AP51674 278 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 GPBAR1Q8TDU6 330 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 MRGPRFQ96AM1 343 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 ANAPC16Q96DE5 110 aa12.38□□□□□ -0.43
LIMS1-215ENST00000544547 KLF13Q9Y2Y9 288 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-215ENST00000544547 SUCLG1P53597 346 aaKnown RBP12.37□□□□□ -0.43
LIMS1-215ENST00000544547 TIGITQ495A1 244 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 ST6GALNAC3Q8NDV1 305 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 BOD1Q96IK1 185 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF355PQ9NSJ1 428 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 FAM206AQ9NX38 181 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 IGKV1D-43A0A0B4J1Z2 117 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 TNFSF10P50591 281 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 RAB7AP51149 207 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 TMEM187Q14656 261 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 PRR27Q6MZM9 219 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 GCNT2Q8N0V5 402 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 GPR27Q9NS67 375 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 HEATR5AQ86XA9 2040 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms