RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 DMBX1Q8NFW5 382 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 OR10P1Q8NGE3 313 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 EDARADDQ8WWZ3 215 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 ANGPTL4Q9BY76 406 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 OBP2BQ9NPH6 170 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 V9GYS6 101 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 FER1L5A0AVI2 2057 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 CYB5R3P00387 301 aaPredicted RBP11.17□□□□□ -0.62
MSH6-210ENST00000540021 GABRA2P47869 451 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 FAM27BQ5VT28 67 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 NPIPB13A6NJU9 1138 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 NPIPB4C9JG80 1138 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 EDDM3BP56851 147 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 RAC1P63000 192 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 EIF3IQ13347 325 aaKnown RBP11.17□□□□□ -0.62
MSH6-210ENST00000540021 EDDM3AQ14507 147 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 KMT5CQ86Y97 462 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 LURAP1LQ8IV03 231 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 M1APQ8TC57 530 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 GPR146Q96CH1 333 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 OR2H1Q9GZK4 316 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 TMEM38BQ9NVV0 291 aa11.17□□□□□ -0.62
MSH6-210ENST00000540021 EML5Q05BV3 1969 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGKV1D-13A0A0B4J2D9 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGKV1-12A0A0C4DH73 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 PROB1E7EW31 1015 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 RRP8O43159 456 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 PAGE4O60829 102 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGKV1D-12P01611 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGHV3-13P01766 116 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGHV3-7P01780 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGKV1-13P0DP09 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 CEACAM6P40199 344 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 HTD2P86397 168 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 AGBL5Q8NDL9 886 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 OR10G4Q8NGN3 311 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 OR10G9Q8NGN4 311 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 OR10G7Q8NGN6 311 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 RFESDQ8TAC1 157 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 MRPL30Q8TCC3 161 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 SMDT1Q9H4I9 107 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 FOXD3Q9UJU5 478 aaPredicted RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 TRAPPC1Q9Y5R8 145 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGKV1-27A0A075B6S5 117 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 RPL36A-HNRNPH2H7BZ11 118 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 HIST1H1BP16401 226 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 HOXC12P31275 282 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 CXCL12P48061 93 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 OR2T10Q8NGZ9 312 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 PNRC2Q9NPJ4 139 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 NAT8Q9UHE5 227 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 TGOLN2O43493 480 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 SNRPCP09234 159 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 F2RP25116 425 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 LYSMD4Q5XG99 296 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 ZNF441Q8N8Z8 693 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 OR10V1Q8NGI7 309 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 C18orf12Q96KH6 178 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 ACTR3CQ9C0K3 210 aaPredicted RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 VSIRQ9H7M9 311 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 ZDHHC11Q9H8X9 412 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 HEYLQ9NQ87 328 aaPredicted RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 RYDENQ9NUL5 291 aaKnown RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 PCDH15Q96QU1 1955 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 PIGBOS1A0A0B4J2F0 54 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 SLC22A20A6NK97 555 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 B4DEV8 164 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 SYNGR1O43759 233 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 IGHV2-5P01817 119 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 CASP6P55212 293 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 H1FOOQ8IZA3 346 aaPredicted RBP11.16□□□□□ -0.62
MSH6-210ENST00000540021 CLDND2Q8NHS1 167 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 MS4A10Q96PG2 267 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 SRXN1Q9BYN0 137 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 CDH20Q9HBT6 801 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 CBLN4Q9NTU7 201 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 B4GALT7Q9UBV7 327 aa11.16□□□□□ -0.62
MSH6-210ENST00000540021 ARHGAP21Q5T5U3 1957 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 CACNA1GO43497 2377 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 DEFB108AA8MXU0 73 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 COX5AP20674 150 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 KITLGP21583 273 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 STARD6P59095 220 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 ZNF468Q5VIY5 522 aaPredicted RBP11.15□□□□□ -0.62
MSH6-210ENST00000540021 ABHD17BQ5VST6 288 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 H2BFWTQ7Z2G1 175 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 REC114Q7Z4M0 266 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 OR2V1Q8NHB1 315 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 C10orf35Q96D05 121 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 IL17BQ9UHF5 180 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 PGLYRP1O75594 196 aaPredicted RBP11.15□□□□□ -0.62
MSH6-210ENST00000540021 SLC25A6P12236 298 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 ZNF25P17030 456 aaPredicted RBP11.15□□□□□ -0.62
MSH6-210ENST00000540021 ZNF90Q03938 601 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 EXT1Q16394 746 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 ZNF506Q5JVG8 444 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 BTNL3Q6UXE8 466 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 OR4C12Q96R67 309 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 DUSP23Q9BVJ7 150 aa11.15□□□□□ -0.62
MSH6-210ENST00000540021 SEBOXQ9HB31 216 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms