RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SDCBPO00560 298 aaPredicted RBP11.82□□□□□ -0.52
USP28-204ENST00000537642 SLC22A1O15245 554 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 PDCD6O75340 191 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 OR2F2O95006 317 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 IGHV3-43DP0DP04 118 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 HTR2CP28335 458 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 MADCAM1Q13477 382 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 TRAM1Q15629 374 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 TBCEQ15813 527 aaPredicted RBP11.82□□□□□ -0.52
USP28-204ENST00000537642 TMEM95Q3KNT9 176 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 OR10X1Q8NGY0 326 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 WIPF2Q8TF74 440 aaPredicted RBP11.82□□□□□ -0.52
USP28-204ENST00000537642 RBM14Q96PK6 669 aaKnown RBP11.82□□□□□ -0.52
USP28-204ENST00000537642 WNT10AQ9GZT5 417 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 BLOC1S6Q9UL45 172 aa11.82□□□□□ -0.52
USP28-204ENST00000537642 TMEM14DPA8MWL7 114 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 CA11O75493 328 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 AMY1AP04745 511 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 AMY2AP04746 511 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 RCC1P18754 421 aaPredicted RBP11.81□□□□□ -0.52
USP28-204ENST00000537642 PSMA1P25786 263 aaKnown RBP11.81□□□□□ -0.52
USP28-204ENST00000537642 CHATP28329 748 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 VDAC2P45880 294 aaPredicted RBP11.81□□□□□ -0.52
USP28-204ENST00000537642 RAB7AP51149 207 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 RPS27AP62979 156 aaKnown RBP11.81□□□□□ -0.52
USP28-204ENST00000537642 QRFPP83859 136 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 FABP5Q01469 135 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 UNC119Q13432 240 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 C2orf68Q2NKX9 166 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 C6orf183Q5T699 404 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 LINC00311Q8N616 119 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 DRAM1Q8N682 238 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 OR6M1Q8NGM8 313 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 OR56B4Q8NH76 319 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 AKR1E2Q96JD6 320 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 OCSTAMPQ9BR26 566 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 TMEM59Q9BXS4 323 aa11.81□□□□□ -0.52
USP28-204ENST00000537642 SPINT2O43291 252 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 ARL6IP5O75915 188 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 BPNT1O95861 308 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 HBZP02008 142 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 SNRNP70P08621 437 aaKnown RBP11.8□□□□□ -0.52
USP28-204ENST00000537642 CSF1P09603 554 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 CD28P10747 220 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 SSX1Q16384 188 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 ARSJQ5FYB0 599 aaPredicted RBP11.8□□□□□ -0.52
USP28-204ENST00000537642 NKAPLQ5M9Q1 402 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 ZNF367Q7RTV3 350 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 THNSL2Q86YJ6 484 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 OR8H3Q8N146 312 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 C8orf31Q8N9H6 132 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 OR1L1Q8NH94 360 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 KCNG3Q8TAE7 436 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 MRPL30Q8TCC3 161 aaKnown RBP11.8□□□□□ -0.52
USP28-204ENST00000537642 SULT4A1Q9BR01 284 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 NICN1Q9BSH3 213 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 TM2D1Q9BX74 207 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 ACOT13Q9NPJ3 140 aa11.8□□□□□ -0.52
USP28-204ENST00000537642 MBNL3Q9NUK0 354 aaKnown RBP11.8□□□□□ -0.52
USP28-204ENST00000537642 AK6Q9Y3D8 172 aaKnown RBP11.8□□□□□ -0.52
USP28-204ENST00000537642 A0A0A6YYD4 124 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 SH2D7A6NKC9 451 aaPredicted RBP11.79□□□□□ -0.52
USP28-204ENST00000537642 SLC17A2O00624 439 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 HSD17B6O14756 317 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 SLC31A2O15432 143 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 FBXO24O75426 580 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 FAM106CPP0CH98 169 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 CALRP27797 417 aaKnown RBP11.79□□□□□ -0.52
USP28-204ENST00000537642 ZNF816Q0VGE8 651 aaPredicted RBP11.79□□□□□ -0.52
USP28-204ENST00000537642 P2RY14Q15391 338 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 Q3ZCU0 254 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 ABCA11PQ4W5N1 156 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 TRAT1Q6PIZ9 186 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 C6orf201Q7Z4U5 140 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 C5orf24Q7Z6I8 188 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 PRR18Q8N4B5 295 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 ZNF439Q8NDP4 499 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 OR10V1Q8NGI7 309 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 FAM110DQ8TAY7 271 aaPredicted RBP11.79□□□□□ -0.52
USP28-204ENST00000537642 NEDD4LQ96PU5 975 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 TAF9BQ9HBM6 251 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 RAB9BQ9NP90 201 aa11.79□□□□□ -0.52
USP28-204ENST00000537642 CCRL2O00421 344 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 PEX14O75381 377 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 GAPDHP04406 335 aaKnown RBP11.78□□□□□ -0.52
USP28-204ENST00000537642 LPLP06858 475 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 REG1BP48304 166 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 ZNF134P52741 427 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 GABARAPL2P60520 117 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 EMX1Q04741 257 aaPredicted RBP11.78□□□□□ -0.52
USP28-204ENST00000537642 TMEM30BQ3MIR4 351 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 SLC25A48Q6ZT89 311 aaKnown RBP11.78□□□□□ -0.52
USP28-204ENST00000537642 LYG1Q8N1E2 194 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 ST6GALNAC6Q969X2 333 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 FAAP24Q9BTP7 215 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 LPAR5Q9H1C0 372 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 PLGRKTQ9HBL7 147 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 GNG12Q9UBI6 72 aa11.78□□□□□ -0.52
USP28-204ENST00000537642 MOB4Q9Y3A3 225 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms