RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	NXT1	Q9UKK6	140 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	PIGL	Q9Y2B2	252 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	RGPD3	A6NKT7	1758 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	RGPD4	Q7Z3J3	1758 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110		A0A087WUU8	490 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	hDV102S1	A0JD36	115 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110		A6NDN8	102 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	SERINC4	A6NH21	518 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110		E5RGE8	158 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	FTCDNL1	E5RQL4	147 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	GAPDHS	O14556	408 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ARPC1B	O15143	372 aa	Known RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	EEF1E1	O43324	174 aa	Known RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	CEACAM4	O75871	244 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	DIRAS1	O95057	198 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	CNIH1	O95406	144 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	PRSS56	P0CW18	603 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TCN2	P20062	427 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	GYG1	P46976	350 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	RIPPLY3	P57055	190 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	YPEL3	P61236	119 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ARG2	P78540	354 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	LCN2	P80188	198 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM267	Q0VDI3	215 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	EDDM3A	Q14507	147 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	P2RY6	Q15077	328 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	PMVK	Q15126	192 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	PMCHL1	Q16048	86 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TNXA	Q16473	311 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	UPP1	Q16831	310 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ZSWIM7	Q19AV6	140 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	C2orf68	Q2NKX9	166 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	C6orf136	Q5SQH8	315 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	DCST2	Q5T1A1	773 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	GFI1B	Q5VTD9	330 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	SLC27A1	Q6PCB7	646 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	KCTD18	Q6PI47	426 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110		Q6ZSR9	355 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	MOB1B	Q7L9L4	216 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	CALHM3	Q86XJ0	350 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	C1orf174	Q8IYL3	243 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	SMIM20	Q8N5G0	67 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TTC9C	Q8N5M4	171 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	BCORP1	Q8N888	145 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	CDRT4	Q8N9R6	151 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	OR4L1	Q8NH43	312 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ZNRF2	Q8NHG8	242 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TVP23C	Q96ET8	276 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	WDR34	Q96EX3	536 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF681	Q96N22	645 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	RCHY1	Q96PM5	261 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	AQP10	Q96PS8	301 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	TBX15	Q96SF7	602 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	SPAG8	Q99932	426 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	DPY30	Q9C005	99 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	IFI27L2	Q9H2X8	130 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	MRPL17	Q9NRX2	175 aa	Known RBP	4.73	□□□□□ -1.65
CD44-231	ENST00000531110	OCIAD1	Q9NX40	245 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF226	Q9NYT6	803 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	CYSLTR1	Q9Y271	337 aa		4.73	□□□□□ -1.65
CD44-231	ENST00000531110	HELZ	P42694	1942 aa	Known RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	TRAV1-2	A0A0B4J238	106 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	P2RY10	O00398	339 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RS1	O15537	224 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	PRKN	O60260	465 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	SLC16A7	O60669	478 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	MAS1	P04201	325 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	WNT2	P09544	360 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RAB40AL	P0C0E4	278 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	SEC11B	P0C7V7	166 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	NPY1R	P25929	384 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	GUCA1A	P43080	201 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	REG1B	P48304	166 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	CX3CR1	P49238	355 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	DIO3	P55073	304 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	TPPP2	P59282	170 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RAB10	P61026	200 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RHOB	P62745	196 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	SEC11A	P67812	179 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	EWSR1	Q01844	656 aa	Known RBP eCLIP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	MEF2B	Q02080	365 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RAB40B	Q12829	278 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	ENDOG	Q14249	297 aa	Known RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	POM121L1P	Q3SYA9	428 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	FAM162B	Q5T6X4	162 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	C1orf189	Q5VU69	101 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	FRG2	Q64ET8	278 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	NIPAL3	Q6P499	406 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RNASEK	Q6P5S7	137 aa	Known RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	SPSB3	Q6PJ21	355 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	PQLC2	Q6ZP29	291 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM179B	Q7Z7N9	219 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM25	Q86YD3	366 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	ZADH2	Q8N4Q0	377 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	KRTCAP2	Q8N6L1	136 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF676	Q8N7Q3	588 aa		4.72	□□□□□ -1.65
CD44-231	ENST00000531110	RBMXL3	Q8N7X1	1067 aa	Known RBP	4.72	□□□□□ -1.65
CD44-231	ENST00000531110	C8orf31	Q8N9H6	132 aa		4.72	□□□□□ -1.65

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