RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TMEM30BQ3MIR4 351 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 Q3ZCU0 254 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 FAM27D1Q5T7N8 215 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 SYT6Q5T7P8 510 aaPredicted RBP10.61□□□□□ -0.71
VPS28-211ENST00000530790 GLT8D1Q68CQ7 371 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 TRAT1Q6PIZ9 186 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 CENPVQ7Z7K6 275 aaPredicted RBP10.61□□□□□ -0.71
VPS28-211ENST00000530790 OR5AU1Q8NGC0 362 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 OR4X2Q8NGF9 303 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 OR4K15Q8NH41 348 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 PHYHIPQ92561 330 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 UFD1Q92890 307 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 GNG12Q9UBI6 72 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 TPRKBQ9Y3C4 175 aa10.61□□□□□ -0.71
VPS28-211ENST00000530790 CMYA5Q8N3K9 4069 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 SH2D7A6NKC9 451 aaPredicted RBP10.6□□□□□ -0.71
VPS28-211ENST00000530790 C12orf77C9JDV5 145 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 PDCD6O75340 191 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 IGKV1D-33P01593 117 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 IGKV1-33P01594 117 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 GAPDHP04406 335 aaKnown RBP10.6□□□□□ -0.71
VPS28-211ENST00000530790 AMY1AP04745 511 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 AMY2AP04746 511 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 GLAP06280 429 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 FUT3P21217 361 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 MYF6P23409 242 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 LOXL3P58215 753 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 HSD17B12Q53GQ0 312 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 MOB3BQ86TA1 216 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 PRR18Q8N4B5 295 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 LINC00311Q8N616 119 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 C8orf31Q8N9H6 132 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 SGCDQ92629 289 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 ANKRD60Q9BZ19 345 aa10.6□□□□□ -0.71
VPS28-211ENST00000530790 IGHV1-3A0A0C4DH29 117 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 A0A1W2PRX2 142 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 UBE2QL1A1L167 161 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 ADARB2-AS1A8MUL3 147 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 H0YHG0 523 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 RGS10O43665 173 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 SC5DO75845 299 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 MPIG6BO95866 241 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 HBZP02008 142 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 HSMCR30P0CW71 290 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 VHLP40337 213 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 REG1BP48304 166 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 HSPA13P48723 471 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 CD83Q01151 205 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 HNF4GQ14541 408 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 IRF3Q14653 427 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 KHDC1LQ5JSQ8 128 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 NKAPLQ5M9Q1 402 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 LIPKQ5VXJ0 399 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 UNQ9370/PRO34162Q6UXP9 181 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 CEACAM19Q7Z692 300 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 LRRTM1Q86UE6 522 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 IZUMO1Q8IYV9 350 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 GAPTQ8N292 157 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 C5orf56Q8N8D9 126 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 OR10V1Q8NGI7 309 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 TMEM59Q9BXS4 323 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 CCDC90BQ9GZT6 254 aa10.59□□□□□ -0.71
VPS28-211ENST00000530790 ERICH4A6NGS2 130 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 G3V4G9 280 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 FGF16O43320 207 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 TXNL1O43396 289 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 UCHL1P09936 223 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 VSIG8P0DPA2 414 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 PF4V1P10720 104 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 RCC1P18754 421 aaPredicted RBP10.58□□□□□ -0.72
VPS28-211ENST00000530790 HTR2CP28335 458 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 GP2P55259 537 aaKnown RBP10.58□□□□□ -0.72
VPS28-211ENST00000530790 SIGIRRQ6IA17 410 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 IZUMO2Q6UXV1 221 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 OR1L1Q8NH94 360 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 TMEM203Q969S6 136 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 NEDD4LQ96PU5 975 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 DUSP21Q9H596 190 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 KCNIP1Q9NZI2 227 aa10.58□□□□□ -0.72
VPS28-211ENST00000530790 TSSC4Q9Y5U2 329 aaPredicted RBP10.58□□□□□ -0.72
VPS28-211ENST00000530790 IGHV3-72A0A0B4J1Y9 119 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 TCRBV4S1A1TA0A5B7 111 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 SLC22A1O15245 554 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 SLC31A2O15432 143 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 SRMP19623 302 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 PSMA1P25786 263 aaKnown RBP10.57□□□□□ -0.72
VPS28-211ENST00000530790 RPS27AP62979 156 aaKnown RBP10.57□□□□□ -0.72
VPS28-211ENST00000530790 TRAM1Q15629 374 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 C1orf100Q5SVJ3 147 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 SAMD5Q5TGI4 173 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 OR10K2Q6IF99 312 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 FAM53AQ6NSI3 398 aaPredicted RBP10.57□□□□□ -0.72
VPS28-211ENST00000530790 SLC25A48Q6ZT89 311 aaKnown RBP10.57□□□□□ -0.72
VPS28-211ENST00000530790 ZNF554Q86TJ5 538 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 TGIF2LXQ8IUE1 241 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 ZNF439Q8NDP4 499 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 OR6M1Q8NGM8 313 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 KCNG3Q8TAE7 436 aa10.57□□□□□ -0.72
VPS28-211ENST00000530790 MRPL30Q8TCC3 161 aaKnown RBP10.57□□□□□ -0.72
VPS28-211ENST00000530790 RTN4IP1Q8WWV3 396 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms