RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TOMM40LQ969M1 308 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 ORAI1Q96D31 301 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 DERL3Q96Q80 235 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 KRTAP17-1Q9BYP8 105 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 VCXQ9H320 206 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 ZNF581Q9P0T4 197 aa8.33□□□□□ -1.08
CPSF1-203ENST00000527916 RCC2Q9P258 522 aaKnown RBP8.33□□□□□ -1.08
CPSF1-203ENST00000527916 A0A1W2PPI3 338 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 MCRIP1C9JLW8 97 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 C15orf65H3BRN8 121 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 MYL12BO14950 172 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 CA11O75493 328 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 LPLP06858 475 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 CELP19835 753 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 MAPK3P27361 379 aaPredicted RBP8.32□□□□□ -1.08
CPSF1-203ENST00000527916 CHATP28329 748 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 SSTR5P35346 364 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 MYCNOSP40205 109 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ZNF816Q0VGE8 651 aaPredicted RBP8.32□□□□□ -1.08
CPSF1-203ENST00000527916 EBI3Q14213 229 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 TMEM30BQ3MIR4 351 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ABCA11PQ4W5N1 156 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ATAD3CQ5T2N8 411 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 GLIPR1L1Q6UWM5 242 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ETV3LQ6ZN32 361 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 GAPTQ8N292 157 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 NKAIN3Q8N8D7 197 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ZFP41Q8N8Y5 198 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 BPIFB6Q8NFQ5 453 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 OR14A2Q96R54 314 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 UQCC2Q9BRT2 126 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 DCLRE1BQ9H816 532 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 RAB9BQ9NP90 201 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 GAR1Q9NY12 217 aaKnown RBP8.32□□□□□ -1.08
CPSF1-203ENST00000527916 GHRLQ9UBU3 117 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 NKX1-2Q9UD57 310 aaPredicted RBP8.32□□□□□ -1.08
CPSF1-203ENST00000527916 ERGIC3Q9Y282 383 aa8.32□□□□□ -1.08
CPSF1-203ENST00000527916 MRPS28Q9Y2Q9 187 aaKnown RBP8.32□□□□□ -1.08
CPSF1-203ENST00000527916 SORL1Q92673 2214 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 A0A1W2PP11 408 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 A0A1W2PPK0 400 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 MAGEA13PA6NCF6 341 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 NUDT19A8MXV4 375 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 AIPO00170 330 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 CCRL2O00421 344 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 FGF16O43320 207 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 SC5DO75845 299 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 GAPDHP04406 335 aaKnown RBP8.31□□□□□ -1.08
CPSF1-203ENST00000527916 STEAP3Q658P3 488 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 AHSA2Q719I0 299 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 JAGN1Q8N5M9 183 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 MS4A15Q8N5U1 240 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 OR10X1Q8NGY0 326 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 LEAP2Q969E1 77 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 ARL11Q969Q4 196 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 MUL1Q969V5 352 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 RCHY1Q96PM5 261 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 PRR25Q96S07 402 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 MOB4Q9Y3A3 225 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 HUWE1Q7Z6Z7 4374 aaKnown RBP8.31□□□□□ -1.08
CPSF1-203ENST00000527916 CSMD3Q7Z407 3707 aa8.31□□□□□ -1.08
CPSF1-203ENST00000527916 TRAV39A0A0B4J263 110 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 PSMB11A5LHX3 300 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 SDCBPO00560 298 aaPredicted RBP8.3□□□□□ -1.08
CPSF1-203ENST00000527916 IGHV3-7P01780 117 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 MAS1P04201 325 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 CDK1P06493 297 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 SNRNP70P08621 437 aaKnown RBP8.3□□□□□ -1.08
CPSF1-203ENST00000527916 CD37P11049 281 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 FUT3P21217 361 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 RPL23AP62750 156 aaKnown RBP8.3□□□□□ -1.08
CPSF1-203ENST00000527916 GPR50Q13585 617 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 DIAPH2-AS1Q14236 149 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 LTC4SQ16873 150 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 C6orf141Q5SZD1 244 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 C6orf183Q5T699 404 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 SYT6Q5T7P8 510 aaPredicted RBP8.3□□□□□ -1.08
CPSF1-203ENST00000527916 AWAT2Q6E213 333 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 TRAT1Q6PIZ9 186 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 C10orf99Q6UWK7 81 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 ZNF554Q86TJ5 538 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 DRAM1Q8N682 238 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 C5orf56Q8N8D9 126 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 OR56B4Q8NH76 319 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 NEK7Q8TDX7 302 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 ST6GALNAC6Q969X2 333 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 MND1Q9BWT6 205 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 ZFP57Q9NU63 452 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 GFOD1Q9NXC2 390 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 ETAA1Q9NY74 926 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 PEX16Q9Y5Y5 336 aa8.3□□□□□ -1.08
CPSF1-203ENST00000527916 IGHV1-3A0A0C4DH29 117 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 PNMA8CA0A1B0GUJ8 204 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 HSD17B6O14756 317 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 SPINT2O43291 252 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 UBBP0CG47 229 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 MGMTP16455 207 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 TMEM11P17152 192 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 IL3RAP26951 378 aa8.29□□□□□ -1.08
CPSF1-203ENST00000527916 CD1BP29016 333 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms