RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MORN2Q502X0 79 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 KHDC3LQ587J8 217 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 C1orf194Q5T5A4 169 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 FAM78BQ5VT40 261 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SDHAF4Q5VUM1 108 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 HIST2H2AA3Q6FI13 130 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TMEM225Q6GV28 225 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 WDR59Q6PJI9 974 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ZNF773Q6PK81 442 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 FAM159AQ6UWV7 190 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 FBXW12Q6X9E4 464 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ASCL5Q7RTU5 278 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SLC30A8Q8IWU4 369 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 HIST3H2BBQ8N257 126 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SVBPQ8N300 66 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 JAGN1Q8N5M9 183 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ACOT4Q8N9L9 421 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR52E4Q8NGH9 312 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR51G2Q8NGK0 314 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR10G9Q8NGN4 311 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR4A16Q8NH70 328 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 OR1S1Q8NH92 325 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 ZNF431Q8TF32 576 aaPredicted RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 SPRYD4Q8WW59 207 aaPredicted RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 BAALCQ8WXS3 180 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 RPEQ96AT9 228 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 RNF157Q96PX1 679 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 FAM173AQ9BQD7 235 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 MARVELD1Q9BSK0 173 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 NUDT9Q9BW91 350 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 LINC00470Q9BZP3 86 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 SLC25A51Q9H1U9 297 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 TXNIPQ9H3M7 391 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 PATZ1Q9HBE1 687 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 NRN1Q9NPD7 142 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 CBLN4Q9NTU7 201 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 DUS2Q9NX74 493 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 MRPL27Q9P0M9 148 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 COMMD3Q9UBI1 195 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 C14orf166Q9Y224 244 aaKnown RBP2.67□□□□□ -1.98
CD44-217ENST00000525348 SIGLEC9Q9Y336 463 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 LRRK1Q38SD2 2015 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 LOXHD1Q8IVV2 1947 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 LTBP1Q14766 1721 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 IGSF9BQ9UPX0 1349 aa2.67□□□□□ -1.98
CD44-217ENST00000525348 COL4A4P53420 1690 aaPredicted RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 C4BP0C0L5 1744 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 IGHV2OR16-5A0A0B4J2B6 119 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 KBTBD11-OT1A0A1B0GTJ5 212 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ANKRD20A5PA0PJZ0 165 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 HIDE1A8MVS5 230 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 EFCAB9A8MZ26 197 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 MYL12BO14950 172 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 RGS16O15492 202 aaPredicted RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 FABP7O15540 132 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 OR2T1O43869 369 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ORC5O43913 435 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 OR7C2O60412 319 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 FCN3O75636 299 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 SLC2A10O95528 541 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 NUDT14O95848 222 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 HAND1O96004 215 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 OXTP01178 125 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 HLA-HP01893 362 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ISG15P05161 165 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 HPNP05981 417 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 CD2P06729 351 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 RHOCP08134 193 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 GZMBP10144 247 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ESDP10768 282 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 MYL12AP19105 171 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 MIPP30301 263 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 SAA4P35542 130 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 NBL1P41271 181 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 BDKRB1P46663 353 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 GABRA2P47869 451 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 OR3A4PP47883 348 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 OR1D4P47884 311 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 TFPI2P48307 235 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 CCL11P51671 97 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ZNF133P52736 654 aaPredicted RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 RPS6P62753 249 aaKnown RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 RPL8P62917 257 aaKnown RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 RUNX1Q01196 453 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ZNF763Q0D2J5 394 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 GNMTQ14749 295 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 MAD2L1BPQ15013 274 aaPredicted RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 EBPQ15125 230 aaKnown RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 TSNQ15631 228 aaKnown RBP2.66□□□□□ -1.98
CD44-217ENST00000525348 CD226Q15762 336 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 GABRA6Q16445 453 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 LTC4SQ16873 150 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 ZNF404Q494X3 552 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 LINC01620Q4KN68 170 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 TMEM78Q5T7P6 136 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 HIST2H3PS2Q5TEC6 136 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 TMEM236Q5W0B7 351 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 CST9Q5W186 159 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 RTL6Q6ICC9 239 aa2.66□□□□□ -1.98
CD44-217ENST00000525348 IGFL2Q6UWQ7 119 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms