RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 IGKV6D-21A0A0A0MT36 114 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 A0A1W2PPV4 95 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 ARRDC5A6NEK1 342 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 D6RAR5 112 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 K7EMT4 169 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 GPR171O14626 319 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 PDCD5O14737 125 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 HPGDSO60760 199 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 SLC19A2O60779 497 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 CDRT1O95170 752 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 FBP1P09467 338 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 SPI1P17947 270 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 CXCL3P19876 107 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 S100PP25815 95 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 GPR1P46091 355 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 NMUP48645 174 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 AKR1D1P51857 326 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 SNRPGP62308 76 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 C2orf80Q0P641 193 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 TMEM183BQ1AE95 376 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 C12orf54Q6X4T0 127 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 TMEM183AQ8IXX5 376 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 SPAG16Q8N0X2 631 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 LINC01555Q8NAE3 123 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 CD300LFQ8TDQ1 290 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 SFT2D1Q8WV19 159 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 PIH1D2Q8WWB5 315 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 CLDN23Q96B33 292 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 APH1AQ96BI3 265 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 MRPL48Q96GC5 212 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 FOXC2Q99958 501 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 EXOSC4Q9NPD3 245 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 MS4A12Q9NXJ0 267 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 POLR3HQ9Y535 204 aaPredicted RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 ZNF106Q9H2Y7 1883 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 TDRD6O60522 2096 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 MAP1BP46821 2468 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 TP53BP1Q12888 1972 aaPredicted RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 SCN8AQ9UQD0 1980 aa5.04□□□□□ -1.6
LSM1-202ENST00000520286 VPS13AQ96RL7 3174 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 SPTBN2O15020 2390 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 KIAA1671Q9BY89 1806 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 RAD1O60671 282 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 CSTAP01040 98 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 IGLV2-23P01705 113 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 GLAP06280 429 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 NR2C1P13056 603 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 GPX2P18283 190 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 CXCL2P19875 107 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 OGNP20774 298 aaKnown RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 LCN1P31025 176 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 GDI2P50395 445 aaKnown RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 DCDP81605 110 aaKnown RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 TPBGQ13641 420 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 TSNQ15631 228 aaKnown RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 RPEL1Q2QD12 228 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 CDKL4Q5MAI5 379 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 TPTE2P1Q5T6R2 138 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 HES5Q5TA89 166 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 BCL2L15Q5TBC7 163 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 TMEM91Q6ZNR0 172 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 RASSF6Q6ZTQ3 369 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 C6orf120Q7Z4R8 191 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 ZNF547Q8IVP9 402 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 C11orf53Q8IXP5 236 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 SPICQ8N5J4 248 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 OR9Q1Q8NGQ5 310 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 OR1S1Q8NH92 325 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 STAG3L4Q8TBR4 150 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 TMEM230Q96A57 120 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 KCTD7Q96MP8 289 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 C7orf50Q9BRJ6 194 aaKnown RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 HDHD3Q9BSH5 251 aaPredicted RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 NKX6-2Q9C056 277 aaPredicted RBP5.03□□□□□ -1.6
LSM1-202ENST00000520286 RNF122Q9H9V4 155 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 ZNF222Q9UK12 451 aa5.03□□□□□ -1.6
LSM1-202ENST00000520286 TET2Q6N021 2002 aaPredicted RBP5.02□□□□□ -1.61
LSM1-202ENST00000520286 TRDV1A0A1B0GX56 115 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 PLAC8L1A1L4L8 177 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 A6NDX4 124 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 ZNF729A6NN14 1252 aaPredicted RBP5.02□□□□□ -1.61
LSM1-202ENST00000520286 CYSRT1A8MQ03 144 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 SULT1C2O00338 296 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 PLPP1O14494 284 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 SGCEO43556 437 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 ZNF861PO60384 105 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 HSBP1O75506 76 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 SC5DO75845 299 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 FARS2O95363 451 aaKnown RBP5.02□□□□□ -1.61
LSM1-202ENST00000520286 RLN2P04090 185 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 TCRBP04435 133 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 STAG3L2P0CL84 134 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 CXCL8P10145 99 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 GABRA1P14867 456 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 CSNK2A2P19784 350 aaPredicted RBP5.02□□□□□ -1.61
LSM1-202ENST00000520286 RAB3BP20337 219 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 PAX6P26367 422 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 KDELR2P33947 212 aa5.02□□□□□ -1.61
LSM1-202ENST00000520286 VSX2P58304 361 aaPredicted RBP5.02□□□□□ -1.61
LSM1-202ENST00000520286 TPI1P60174 286 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms