RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 LOXL3P58215 753 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 EBI3Q14213 229 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 C6orf183Q5T699 404 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 RAB12Q6IQ22 244 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 LAIR2Q6ISS4 152 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 TRAT1Q6PIZ9 186 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 MOB3BQ86TA1 216 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 UQCC2Q9BRT2 126 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 TRAPPC2LQ9UL33 140 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 ERGIC3Q9Y282 383 aa13.86□□□□□ -0.19
DDX41-217ENST00000515562 SERPINE3A8MV23 424 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 C12orf77C9JDV5 145 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 TXNL1O43396 289 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 DUS4LO95620 317 aaKnown RBP13.85□□□□□ -0.19
DDX41-217ENST00000515562 IGLL1P15814 213 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 MGMTP16455 207 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 REG1BP48304 166 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 HNF4GQ14541 408 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 SYT6Q5T7P8 510 aaPredicted RBP13.85□□□□□ -0.19
DDX41-217ENST00000515562 SLC35E3Q7Z769 313 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 FOXRED2Q8IWF2 684 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 GAPTQ8N292 157 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 BPIFB6Q8NFQ5 453 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 UBALD1Q8TB05 177 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 MRAPQ8TCY5 172 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 RTN4IP1Q8WWV3 396 aaPredicted RBP13.85□□□□□ -0.19
DDX41-217ENST00000515562 RCC1LQ96I51 464 aaKnown RBP13.85□□□□□ -0.19
DDX41-217ENST00000515562 SELENOIQ9C0D9 397 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 GNG12Q9UBI6 72 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 GHRLQ9UBU3 117 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 PEX16Q9Y5Y5 336 aa13.85□□□□□ -0.19
DDX41-217ENST00000515562 IGHV3-43A0A0B4J1X8 118 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 CRTAPO75718 401 aaPredicted RBP13.84□□□□□ -0.19
DDX41-217ENST00000515562 SC5DO75845 299 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 IGHG2P01859 326 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 GLAP06280 429 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 IGHV3-43DP0DP04 118 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 SLC6A1P30531 599 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 SLC35B1P78383 322 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 FOXB2Q5VYV0 432 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 LYPD6Q86Y78 171 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 TGIF2LXQ8IUE1 241 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 NANOGP1Q8N7R0 232 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 OR51D1Q8NGF3 324 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 OR2T10Q8NGZ9 312 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 ST6GALNAC6Q969X2 333 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 EAF1Q96JC9 268 aaPredicted RBP13.84□□□□□ -0.19
DDX41-217ENST00000515562 Q96M66 194 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 CST11Q9H112 138 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 BANF2Q9H503 90 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 FKBP14Q9NWM8 211 aa13.84□□□□□ -0.19
DDX41-217ENST00000515562 AURKAIP1Q9NWT8 199 aaPredicted RBP13.84□□□□□ -0.19
DDX41-217ENST00000515562 FUT3P21217 361 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 ZNF137PP52743 207 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 GPR50Q13585 617 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 SLC25A48Q6ZT89 311 aaKnown RBP13.83□□□□□ -0.2
DDX41-217ENST00000515562 ZNF329Q86UD4 541 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 COMMD1Q8N668 190 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 Q8N6K4 173 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 TMEM104Q8NE00 496 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 OR4K15Q8NH41 348 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 NOL4LQ96MY1 436 aaPredicted RBP13.83□□□□□ -0.2
DDX41-217ENST00000515562 MND1Q9BWT6 205 aa13.83□□□□□ -0.2
DDX41-217ENST00000515562 LIN7CQ9NUP9 197 aaKnown RBP13.83□□□□□ -0.2
DDX41-217ENST00000515562 IGHV3-72A0A0B4J1Y9 119 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 NCBP2LA6PVI3 153 aaKnown RBP13.82□□□□□ -0.2
DDX41-217ENST00000515562 PDCD6O75340 191 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 MOSP00540 346 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 HBZP02008 142 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 UBBP0CG47 229 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 CD1BP29016 333 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 RPL23AP62750 156 aaKnown RBP13.82□□□□□ -0.2
DDX41-217ENST00000515562 RNLSQ5VYX0 342 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 ZNF554Q86TJ5 538 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 PRR18Q8N4B5 295 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 MS4A15Q8N5U1 240 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 ZNF439Q8NDP4 499 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 OR8H1Q8NGG4 311 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 TFAP2CQ92754 450 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 GPR61Q9BZJ8 451 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 ZFP57Q9NU63 452 aa13.82□□□□□ -0.2
DDX41-217ENST00000515562 DNAH3Q8TD57 4116 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 AP4M1O00189 453 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 STEAP3Q658P3 488 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 OR2W3Q7Z3T1 314 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 STPG2Q8N412 459 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 LINC00482Q8N8I6 264 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 FAM46BQ96A09 425 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 GON7Q9BXV9 100 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 ABCG5Q9H222 651 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 MBNL3Q9NUK0 354 aaKnown RBP13.81□□□□□ -0.2
DDX41-217ENST00000515562 KCNIP1Q9NZI2 227 aa13.81□□□□□ -0.2
DDX41-217ENST00000515562 SLC31A2O15432 143 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 CDK1P06493 297 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 RCC1P18754 421 aaPredicted RBP13.8□□□□□ -0.2
DDX41-217ENST00000515562 GPR12P47775 334 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 GABPB1Q06547 395 aaPredicted RBP13.8□□□□□ -0.2
DDX41-217ENST00000515562 SIGIRRQ6IA17 410 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 FAM53AQ6NSI3 398 aaPredicted RBP13.8□□□□□ -0.2
DDX41-217ENST00000515562 Q8N9W7 124 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms