RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TEX30Q5JUR7 227 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 TMEM252Q8N6L7 170 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 AQP3Q92482 292 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 GPR87Q9BY21 358 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 CXXC4Q9H2H0 198 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 C5orf66Q9H5L9 145 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 AKIRIN1Q9H9L7 192 aaPredicted RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 EIF3GO75821 320 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP53-209ENST00000514665 CRYABP02511 175 aaKnown RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 RPS11P62280 158 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP53-209ENST00000514665 PMS2P11Q13670 270 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 LRRC10Q5BKY1 277 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 FBXW9Q5XUX1 488 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 LAMTOR1Q6IAA8 161 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 DHRS7CA6NNS2 312 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 KIAA1324LA8MWY0 1029 aaPredicted RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 OR2A4O95047 310 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 IFI6P09912 130 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 ID4P47928 161 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 OR2A7Q96R45 310 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 ZNF71Q9NQZ8 489 aaPredicted RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 CACFD1Q9UGQ2 172 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 PRSS50Q9UI38 385 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 ABCA4P78363 2273 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 IGKV1D-43A0A0B4J1Z2 117 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 CRYM-AS1A6NIL9 109 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 PPP1CCP36873 323 aaKnown RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 C2orf68Q2NKX9 166 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 VMA21Q3ZAQ7 101 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 PMS2CLQ68D20 193 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 SSX7Q7RTT5 188 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 GYPAP02724 150 aa11□□□□□ -0.65
USP53-209ENST00000514665 F2RP25116 425 aa11□□□□□ -0.65
USP53-209ENST00000514665 PAX5Q02548 391 aa11□□□□□ -0.65
USP53-209ENST00000514665 NHLRC3Q5JS37 347 aa11□□□□□ -0.65
USP53-209ENST00000514665 MOGAT3Q86VF5 341 aa11□□□□□ -0.65
USP53-209ENST00000514665 OR2T10Q8NGZ9 312 aa11□□□□□ -0.65
USP53-209ENST00000514665 MISP3Q96FF7 219 aa11□□□□□ -0.65
USP53-209ENST00000514665 SPSB2Q99619 263 aa11□□□□□ -0.65
USP53-209ENST00000514665 A0A1W2PR77 199 aa11□□□□□ -0.65
USP53-209ENST00000514665 ZNF98A6NK75 572 aa11□□□□□ -0.65
USP53-209ENST00000514665 FCN1O00602 326 aa11□□□□□ -0.65
USP53-209ENST00000514665 MBPP02686 304 aaPredicted RBP11□□□□□ -0.65
USP53-209ENST00000514665 TCL1AP56279 114 aa11□□□□□ -0.65
USP53-209ENST00000514665 RHOBP62745 196 aa11□□□□□ -0.65
USP53-209ENST00000514665 OVCH2Q7RTZ1 564 aa11□□□□□ -0.65
USP53-209ENST00000514665 TMEM56Q96MV1 263 aa11□□□□□ -0.65
USP53-209ENST00000514665 HSD17B10Q99714 261 aaKnown RBP11□□□□□ -0.65
USP53-209ENST00000514665 RSG1Q9BU20 258 aa11□□□□□ -0.65
USP53-209ENST00000514665 ANGPTL4Q9BY76 406 aa11□□□□□ -0.65
USP53-209ENST00000514665 BARX1Q9HBU1 254 aaPredicted RBP11□□□□□ -0.65
USP53-209ENST00000514665 ARL2-SNX15V9GYD0 113 aa11□□□□□ -0.65
USP53-209ENST00000514665 C11orf94C9JXX5 98 aa11□□□□□ -0.65
USP53-209ENST00000514665 TMPRSS2O15393 492 aa11□□□□□ -0.65
USP53-209ENST00000514665 PAGE4O60829 102 aa11□□□□□ -0.65
USP53-209ENST00000514665 SULT1A2P50226 295 aa11□□□□□ -0.65
USP53-209ENST00000514665 MS4A10Q96PG2 267 aa11□□□□□ -0.65
USP53-209ENST00000514665 MTCL1Q9Y4B5 1905 aaKnown RBP11□□□□□ -0.65
USP53-209ENST00000514665 DOCK10Q96BY6 2186 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 SPAARA0A1B0GVQ0 90 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 ST8SIA5O15466 376 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 ACTL6AO96019 429 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 COX7A1P24310 79 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 FOXC1Q12948 553 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 ATP6V1FQ16864 119 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 FDX2Q6P4F2 183 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 MYPOPQ86VE0 399 aaPredicted RBP10.99□□□□□ -0.65
USP53-209ENST00000514665 TMEM251Q8N6I4 163 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 IL22RA2Q969J5 263 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 OR6C3Q9NZP0 311 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 CLN8Q9UBY8 286 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 KIAA2026Q5HYC2 2103 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 A0A1W2PPE3 182 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 RBP4P02753 201 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 PNRC1Q12796 327 aaPredicted RBP10.99□□□□□ -0.65
USP53-209ENST00000514665 IZUMO4Q1ZYL8 232 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 CYB561D1Q8N8Q1 229 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 ADAMTS17Q8TE56 1095 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 BLNKQ8WV28 456 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 TTTY12Q9BZ98 90 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 MIOXQ9UGB7 285 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 VAX2Q9UIW0 290 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 MFSD2BA6NFX1 497 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 SLC31A2O15432 143 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 SYNGR1O43759 233 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 PRF1P14222 555 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 RPL29P47914 159 aaKnown RBP10.99□□□□□ -0.65
USP53-209ENST00000514665 GNG4P50150 75 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 SUMO1P63165 101 aaKnown RBP10.99□□□□□ -0.65
USP53-209ENST00000514665 ARL16Q0P5N6 197 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 OR4A4PQ8NGN8 299 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 OR4S2Q8NH73 311 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 RNF122Q9H9V4 155 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 Q9N2K0 584 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 HSF4Q9ULV5 492 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 MYO7BQ6PIF6 2116 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 MPDZO75970 2070 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 DOCK4Q8N1I0 1966 aa10.99□□□□□ -0.65
USP53-209ENST00000514665 TMEM14DPA8MWL7 114 aa10.98□□□□□ -0.65
USP53-209ENST00000514665 SP1P08047 785 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms