RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 MT-ND2P03891 347 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 CRYBA1P05813 215 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 CCDC159P0C7I6 412 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 ZNF728P0DKX0 622 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 MYL12AP19105 171 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 DCKP27707 260 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PTGFRP43088 359 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 IER3P46695 156 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 OR3A1P47881 315 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 GLIPR1P48060 266 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PCP4P48539 62 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 UBE2E1P51965 193 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 AQP4P55087 323 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 DLX6P56179 175 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 BPIFB3P59826 476 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 RPS11P62280 158 aaKnown RBP eCLIP3.66□□□□□ -1.82
NUP54-206ENST00000508465 AESQ08117 197 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 DYNC1I2Q13409 638 aaKnown RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 INSL4Q14641 139 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 GRK1Q15835 563 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 LY6EQ16553 131 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 TAF9Q16594 264 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PIK3CD-AS1Q5SR53 167 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 C6orf141Q5SZD1 244 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 LDLRAD2Q5SZI1 272 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 UTF1Q5T230 341 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 HIST2H2BDQ6DRA6 164 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 DMKNQ6E0U4 476 aaPredicted RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 CCDC144NLQ6NUI1 221 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 Q6P435 159 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 RPL22L1Q6P5R6 122 aaKnown RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 AHSA2Q719I0 299 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 LHFPL4Q7Z7J7 247 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 C8orf59Q8N0T1 100 aaPredicted RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 DYNAPQ8N1N2 210 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 STX19Q8N4C7 294 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PARP16Q8N5Y8 322 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 NKAIN3Q8N8D7 197 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 ZSCAN4Q8NAM6 433 aaPredicted RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 ZNF485Q8NCK3 441 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 SETD9Q8NE22 299 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 OR5D13Q8NGL4 314 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 GPR148Q8TDV2 347 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 TNFAIP8L1Q8WVP5 186 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 SSMEM1Q8WWF3 244 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 C10orf35Q96D05 121 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 CYYR1Q96J86 154 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 GPER1Q99527 375 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 COMMD4Q9H0A8 199 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PPA2Q9H2U2 334 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 HEXA-AS1Q9H8Q6 139 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 NOX4Q9NPH5 578 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 PAK1IP1Q9NWT1 392 aaPredicted RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 CHCHD3Q9NX63 227 aaKnown RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 C1RLQ9NZP8 487 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 GLS2Q9UI32 602 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 SIGLEC9Q9Y336 463 aa3.66□□□□□ -1.82
NUP54-206ENST00000508465 UBE2J1Q9Y385 318 aaPredicted RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 EXOSC1Q9Y3B2 195 aaKnown RBP3.66□□□□□ -1.82
NUP54-206ENST00000508465 TRBV5-7A0A0A0MS05 114 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 A0A1W2PP11 408 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 IRGMA1A4Y4 181 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 DPPA5A6NC42 116 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 MAGEA13PA6NCF6 341 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 C17orf98A8MV24 154 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 H3BUX3 64 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 CLDN34H7C241 214 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 GABRPO00591 440 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 PIN1P1O15428 100 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 MAGEB3O15480 346 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 SULT1B1O43704 296 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 IGHV3-7P01780 117 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 MBPP02686 304 aaPredicted RBP3.65□□□□□ -1.83
NUP54-206ENST00000508465 ARG1P05089 322 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 FBP1P09467 338 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 ZNF44P15621 663 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 CELP19835 753 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 RAB3AP20336 220 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 CD24P25063 80 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 TGFBR2P37173 567 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 VHLP40337 213 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 MAP2K4P45985 399 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 OR3A4PP47883 348 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 RAG2P55895 527 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 FAM3BP58499 235 aaPredicted RBP3.65□□□□□ -1.83
NUP54-206ENST00000508465 KRTAP10-3P60369 221 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 ZP1P60852 638 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 GABPB1Q06547 395 aaPredicted RBP3.65□□□□□ -1.83
NUP54-206ENST00000508465 ZNF146Q15072 292 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 CDK5R1Q15078 307 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 RSU1Q15404 277 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 SSX2Q16385 188 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 LTC4SQ16873 150 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 PIGYQ3MUY2 71 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 CCDC58Q4VC31 144 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 FAM27D1Q5T7N8 215 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 PRAMEF5Q5TYX0 476 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 NCR3LG1Q68D85 454 aa3.65□□□□□ -1.83
NUP54-206ENST00000508465 FAM53AQ6NSI3 398 aaPredicted RBP3.65□□□□□ -1.83
NUP54-206ENST00000508465 TCF23Q7RTU1 214 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms