RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM71E2Q8N5Q1 922 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 Q8N9W7 124 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 DCUN1D4Q92564 292 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 LEAP2Q969E1 77 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 COQ2Q96H96 371 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 MYCBPQ99417 103 aaPredicted RBP12.77□□□□□ -0.37
VIM-208ENST00000497849 MOB1AQ9H8S9 216 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 GNB4Q9HAV0 340 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 C19orf73Q9NVV2 129 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 AMMECR1Q9Y4X0 333 aaPredicted RBP12.77□□□□□ -0.37
VIM-208ENST00000497849 LOC107986453A0A1B0GWG9 222 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 A6NHS1 94 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 ZNF729A6NN14 1252 aaPredicted RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 NCBP2LA6PVI3 153 aaKnown RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 SYT7O43581 403 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 SAP30O75446 220 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 OR2H2O95918 312 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 PRKACAP17612 351 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 POU3F4P49335 361 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 RAB7AP51149 207 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 CCR9P51686 369 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 FUT6P51993 359 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 ZNF616Q08AN1 781 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 MADCAM1Q13477 382 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 CDK5R1Q15078 307 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 SPHARQ15513 63 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 SPIN3Q5JUX0 258 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 SYT6Q5T7P8 510 aaPredicted RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 FAM53AQ6NSI3 398 aaPredicted RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 RPL22L1Q6P5R6 122 aaKnown RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 OR8H3Q8N146 312 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 Q8N1Y9 231 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 Q8N6K4 173 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 OR51A4Q8NGJ6 313 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 OR13C5Q8NGS8 318 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 RGP1Q92546 391 aaPredicted RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 EAF1Q96JC9 268 aaPredicted RBP12.76□□□□□ -0.37
VIM-208ENST00000497849 NDUFA13Q9P0J0 144 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 TNCP24821 2201 aa12.76□□□□□ -0.37
VIM-208ENST00000497849 FUOMA2VDF0 154 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 OVOL1O14753 267 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 HSMCR30P0CW71 290 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 CGB3P0DN86 165 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 CGB7P0DN87 165 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 CCL1P22362 96 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 GNB1P62873 340 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 RUNX1Q01196 453 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 TMEM244Q5VVB8 128 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 DMKNQ6E0U4 476 aaPredicted RBP12.75□□□□□ -0.37
VIM-208ENST00000497849 OR5AK2Q8NH90 309 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 HSPB9Q9BQS6 159 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 PLSCR3Q9NRY6 295 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 ING3Q9NXR8 418 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 PSG11Q9UQ72 335 aa12.75□□□□□ -0.37
VIM-208ENST00000497849 KBTBD11-OT1A0A1B0GTJ5 212 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 SMIM31A0A1B0GVY4 71 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 A8MZ25 164 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 CELP19835 753 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 SOX2P48431 317 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 MRPL28Q13084 256 aaKnown RBP12.74□□□□□ -0.37
VIM-208ENST00000497849 ZNF491Q8N8L2 437 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 OR13F1Q8NGS4 319 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 GHSRQ92847 366 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 DLX4Q92988 240 aaPredicted RBP12.74□□□□□ -0.37
VIM-208ENST00000497849 FGGYQ96C11 551 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 BORCS8Q96FH0 119 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 UBE2E2Q96LR5 201 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 KCTD7Q96MP8 289 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 OR5B12Q96R08 314 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 MGLLQ99685 303 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 SPATA25Q9BR10 227 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 PPIL3Q9H2H8 161 aaKnown RBP12.74□□□□□ -0.37
VIM-208ENST00000497849 KLK15Q9H2R5 256 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 HMG20AQ9NP66 347 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 EXOSC4Q9NPD3 245 aaKnown RBP12.74□□□□□ -0.37
VIM-208ENST00000497849 GSTK1Q9Y2Q3 226 aa12.74□□□□□ -0.37
VIM-208ENST00000497849 KIAA1109Q2LD37 5005 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 IGHV3-72A0A0B4J1Y9 119 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 SH2D1BO14796 132 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 CSN2P05814 226 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 UBCP0CG48 685 aaKnown RBP12.73□□□□□ -0.37
VIM-208ENST00000497849 VDAC1P21796 283 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 CCDC58Q4VC31 144 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 KRBOX4Q5JUW0 171 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 OR6Q1Q8NGQ2 317 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 HAVCR2Q8TDQ0 301 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 ORAI1Q96D31 301 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 ADAT3Q96EY9 351 aaPredicted RBP12.73□□□□□ -0.37
VIM-208ENST00000497849 OPALINQ96PE5 141 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 CHST5Q9GZS9 411 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 FAM192AQ9GZU8 254 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 COMMD4Q9H0A8 199 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 PLEKHA1Q9HB21 404 aa12.73□□□□□ -0.37
VIM-208ENST00000497849 DNAH10Q8IVF4 4471 aa12.72□□□□□ -0.37
VIM-208ENST00000497849 IGHV1-3A0A0C4DH29 117 aa12.72□□□□□ -0.37
VIM-208ENST00000497849 TMEM212A6NML5 194 aa12.72□□□□□ -0.37
VIM-208ENST00000497849 GATBO75879 557 aaKnown RBP12.72□□□□□ -0.37
VIM-208ENST00000497849 IGF1P05019 195 aa12.72□□□□□ -0.37
VIM-208ENST00000497849 ISG15P05161 165 aa12.72□□□□□ -0.37
VIM-208ENST00000497849 ZNF816Q0VGE8 651 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms