RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 C11orf94C9JXX5 98 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 SYNGR1O43759 233 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 DLK1P80370 383 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 HOXA4Q00056 320 aaPredicted RBP16.69■□□□□ 0.26
COL27A1-207ENST00000494090 C5orf17Q8NAS9 161 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 PATE3B3GLJ2 98 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 MDP1Q86V88 176 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 TSPAN2O60636 221 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 HIST1H1EP10412 219 aaKnown RBP16.69■□□□□ 0.26
COL27A1-207ENST00000494090 TMEM50BP56557 158 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 RIGQ13278 110 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 FAM74A3Q4VXF1 159 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 ZNF596Q8TC21 504 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 IFNL4K9M1U5 179 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 GPR6P46095 362 aaPredicted RBP16.69■□□□□ 0.26
COL27A1-207ENST00000494090 ROM1Q03395 351 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 RBPMS2Q6ZRY4 209 aaKnown RBP16.69■□□□□ 0.26
COL27A1-207ENST00000494090 ISOC2Q96AB3 205 aa16.69■□□□□ 0.26
COL27A1-207ENST00000494090 ZNF385AQ96PM9 386 aaKnown RBP16.69■□□□□ 0.26
COL27A1-207ENST00000494090 CXCL2P19875 107 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 OR10C1Q96KK4 312 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 IGHV3-13P01766 116 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 IGHV3-7P01780 117 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 MRGPRGQ86SM5 289 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 OR8I2Q8N0Y5 310 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 OR1L6Q8NGR2 347 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 MARS2Q96GW9 593 aaKnown RBP16.68■□□□□ 0.26
COL27A1-207ENST00000494090 NPAS1Q99742 590 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 WFDC6Q9BQY6 131 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 ZNF205O95201 554 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 ERVFRD-1P60508 538 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 STPG1Q5TH74 334 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 PCM1Q15154 2024 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 RBM11P57052 281 aaKnown RBP16.68■□□□□ 0.26
COL27A1-207ENST00000494090 GAMTQ14353 236 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 DPPA3Q6W0C5 159 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 VPS25Q9BRG1 176 aa16.68■□□□□ 0.26
COL27A1-207ENST00000494090 AHRRA9YTQ3 701 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 OR10G8Q8NGN5 311 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 MRGPRFQ96AM1 343 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 BRWD1Q9NSI6 2320 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 ATAD5Q96QE3 1844 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 KCNK7Q9Y2U2 307 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 DAOP14920 347 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 C10orf113Q5VZT2 155 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 ID1P41134 155 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 SLC25A10Q9UBX3 287 aaPredicted RBP16.67■□□□□ 0.26
COL27A1-207ENST00000494090 WIPI2Q9Y4P8 454 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 NINQ8N4C6 2090 aa16.67■□□□□ 0.26
COL27A1-207ENST00000494090 NPY1RP25929 384 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 PSG5Q15238 335 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 DCAF12L2Q5VW00 463 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 ASCL3Q9NQ33 180 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 P01737 135 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 FCGR3AP08637 254 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 HOXB1P14653 301 aaPredicted RBP16.66■□□□□ 0.26
COL27A1-207ENST00000494090 SLC16A13Q7RTY0 426 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 SLC35E3Q7Z769 313 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 SLC22A18ASQ8N1D0 253 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 DYRK2Q92630 601 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 LRRC37AA6NMS7 1700 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 H3BQ15 152 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 KHDC3LQ587J8 217 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 HDHD3Q9BSH5 251 aaPredicted RBP16.66■□□□□ 0.26
COL27A1-207ENST00000494090 UFC1Q9Y3C8 167 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 PDE6DO43924 150 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 PITX3O75364 302 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 DEDDO75618 318 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 FAM214BQ7L5A3 538 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 ANGPTL4Q9BY76 406 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 ISG15P05161 165 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 SPINK2P20155 84 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 HERVK_113P61574 105 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 RPL31P62899 125 aaKnown RBP16.66■□□□□ 0.26
COL27A1-207ENST00000494090 TMEM116Q8NCL8 245 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 DYNLRB2Q8TF09 96 aa16.66■□□□□ 0.26
COL27A1-207ENST00000494090 SF3B6Q9Y3B4 125 aaKnown RBP16.66■□□□□ 0.26
COL27A1-207ENST00000494090 ZNF273Q14593 569 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 OR4P4Q8NGL7 312 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 LHFPL5Q8TAF8 219 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 MS4A7Q9GZW8 240 aaPredicted RBP16.65■□□□□ 0.26
COL27A1-207ENST00000494090 PRO1933Q9H354 126 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 MGST3O14880 152 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 TEX30Q5JUR7 227 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 FDX2Q6P4F2 183 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 OR4X1Q8NH49 305 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 ASCC3Q8N3C0 2202 aaKnown RBP16.65■□□□□ 0.26
COL27A1-207ENST00000494090 UPK3AO75631 287 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 PSG2P11465 335 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 FGF5P12034 268 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 IL11P20809 199 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 SMAGPQ0VAQ4 97 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 NCMAPQ5T1S8 102 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 ABHD14AQ9BUJ0 271 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 SMDT1Q9H4I9 107 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 PRR33A8MZF0 331 aa16.65■□□□□ 0.26
COL27A1-207ENST00000494090 RCC2Q9P258 522 aaKnown RBP16.65■□□□□ 0.26
COL27A1-207ENST00000494090 TRBV5-7A0A0A0MS05 114 aa16.64■□□□□ 0.25
COL27A1-207ENST00000494090 RAB29O14966 203 aa16.64■□□□□ 0.25
COL27A1-207ENST00000494090 SMIM6P0DI80 62 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms