RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	THBS3	P49746	956 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	PPP3R1	P63098	170 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	DIAPH2-AS1	Q14236	149 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	MED22	Q15528	200 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	FOXRED2	Q8IWF2	684 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	COMMD1	Q8N668	190 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	SUMF2	Q8NBJ7	301 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	THRSP	Q92748	146 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	DERL3	Q96Q80	235 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	OR14A2	Q96R54	314 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	METTL9	Q9H1A3	318 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	ST3GAL6	Q9Y274	331 aa		12.13	□□□□□ -0.47
MRPL55-231	ENST00000492170	TRAV39	A0A0B4J263	110 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	TMEM30CP	A0ZSE6	113 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	CCRL2	O00421	344 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	SC5D	O75845	299 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	CDRT1	O95170	752 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	IGHG2	P01859	326 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	CSTB	P04080	98 aa	Known RBP	12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	GZMH	P20718	246 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	MYCNOS	P40205	109 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	RBM11	P57052	281 aa	Known RBP	12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF816	Q0VGE8	651 aa	Predicted RBP	12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	MLLT11	Q13015	90 aa	Predicted RBP	12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	TPBG	Q13641	420 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	NHLRC3	Q5JS37	347 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	ASCL4	Q6XD76	172 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	C8orf86	Q6ZUL3	223 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	MOB3B	Q86TA1	216 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	LINC00596	Q86U02	117 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	MS4A15	Q8N5U1	240 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	KLHL30-AS1	Q8NEE0	82 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	ORAI1	Q96D31	301 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	S100A13	Q99584	98 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	YTHDF1	Q9BYJ9	559 aa	Known RBP	12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	IFT22	Q9H7X7	185 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	TMEM138	Q9NPI0	162 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	IL36G	Q9NZH8	169 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	LINC00527	Q9UJ94	153 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	ING4	Q9UNL4	249 aa		12.12	□□□□□ -0.47
MRPL55-231	ENST00000492170	DNAH9	Q9NYC9	4486 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	TRAV8-7	A0A075B6U6	113 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	IGHV1-3	A0A0C4DH29	117 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170		A0A1W2PPE3	182 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	GAPDH	P04406	335 aa	Known RBP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF93	P35789	620 aa	Predicted RBP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	DCTN2	Q13561	401 aa	Known RBP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	DDI2	Q5TDH0	399 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	UNQ9370/PRO34162	Q6UXP9	181 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	STPG2	Q8N412	459 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	CCDC90B	Q9GZT6	254 aa		12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZMAT5	Q9UDW3	170 aa	Known RBP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	KMT2C	Q8NEZ4	4911 aa	Known RBP	12.11	□□□□□ -0.47
MRPL55-231	ENST00000492170	COL7A1	Q02388	2944 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	MAGEA13P	A6NCF6	341 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	NCBP2L	A6PVI3	153 aa	Known RBP	12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	AP4M1	O00189	453 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	GEMIN2	O14893	280 aa	Known RBP	12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF780A	O75290	641 aa	Predicted RBP	12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	CPE	P16870	476 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	SERPINA2	P20848	420 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	IL3RA	P26951	378 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	MAPK3	P27361	379 aa	Predicted RBP	12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	BDKRB2	P30411	391 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	MAP2K4	P45985	399 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	REG1B	P48304	166 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	CD69	Q07108	199 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	EBI3	Q14213	229 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	MPV17L	Q2QL34	196 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	ATAD3C	Q5T2N8	411 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	C11orf87	Q6NUJ2	197 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	C18orf65	Q6ZTR6	163 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	TGIF2LX	Q8IUE1	241 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	IZUMO1	Q8IYV9	350 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	OR52M1	Q8NGK5	317 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	NEK7	Q8TDX7	302 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	UFD1	Q92890	307 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	ARL11	Q969Q4	196 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	MGLL	Q99685	303 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	ACOT13	Q9NPJ3	140 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF581	Q9P0T4	197 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	CKLF	Q9UBR5	152 aa		12.1	□□□□□ -0.47
MRPL55-231	ENST00000492170	IGHV3-72	A0A0B4J1Y9	119 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	SDCBP	O00560	298 aa	Predicted RBP	12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	GP2	P55259	537 aa	Known RBP	12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	INSL4	Q14641	139 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	LIPK	Q5VXJ0	399 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	TEX38	Q6PEX7	206 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF367	Q7RTV3	350 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	LYPD6	Q86Y78	171 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	ZNF695	Q8IW36	515 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	LINC00311	Q8N616	119 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	C8orf31	Q8N9H6	132 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	OR2T10	Q8NGZ9	312 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	EAF1	Q96JC9	268 aa	Predicted RBP	12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	P2RX4	Q99571	388 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	GON7	Q9BXV9	100 aa		12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	LIN7C	Q9NUP9	197 aa	Known RBP	12.09	□□□□□ -0.47
MRPL55-231	ENST00000492170	GFOD1	Q9NXC2	390 aa		12.09	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms