RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 ZNF93P35789 620 aaPredicted RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 NKX2-1P43699 371 aaPredicted RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 LHX2P50458 406 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 DYNLT3P51808 116 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 PRRX1P54821 245 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 PIGPP57054 158 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 SP6Q3SY56 376 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 ABCA11PQ4W5N1 156 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 RAET1LQ5VY80 246 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 MBNL2Q5VZF2 373 aaKnown RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 GLIPR1L1Q6UWM5 242 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 RNF44Q7L0R7 432 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 RAB42Q8N4Z0 105 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 MSI2Q96DH6 328 aaKnown RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF48Q96MX3 618 aaPredicted RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 TSPAN32Q96QS1 320 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 OR6C1Q96RD1 312 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 LMF2Q9BU23 707 aaKnown RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 TMEM59Q9BXS4 323 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 SAMD10Q9BYL1 202 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 PARLQ9H300 379 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 PRO3102Q9H379 93 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 C7orf69Q9H7B7 122 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 ZDHHC11Q9H8X9 412 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 PLSCR4Q9NRQ2 329 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 RPRMQ9NS64 109 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 TP53TG3Q9ULZ0 132 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 VDAC3Q9Y277 283 aa4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 COA3Q9Y2R0 106 aaPredicted RBP4.11□□□□□ -1.75
SNRNP40-206ENST00000489853 VWA8A3KMH1 1905 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 IGKV1D-42A0A075B6H8 117 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 TRAV9-1A0A075B6T8 112 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SAA2-SAA4A0A096LPE2 208 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 A0A1W2PNV4 684 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 GRXCR1A8MXD5 290 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 TAX1BP3O14907 124 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 RBFOX2O43251 390 aaKnown RBP eCLIP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 LMX1BO60663 402 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 NKX2-2O95096 273 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ASAH2BP0C7U1 165 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 STAG3L3P0CL85 134 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 OMGP23515 440 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 UCP1P25874 307 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 CD70P32970 193 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 PSMB3P49720 205 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 LINC00310P59036 64 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 KRTDAPP60985 99 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 PPP1CBP62140 327 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 NTHL1P78549 312 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SERF2P84101 59 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 MEF2BQ02080 365 aaPredicted RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ID2Q02363 134 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 TLE3Q04726 772 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 VGLL4Q14135 290 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF141Q15928 474 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 PMCHL1Q16048 86 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 FFAR4Q5NUL3 377 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 FAM78BQ5VT40 261 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 AMMECR1LQ6DCA0 310 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 LCN15Q6UWW0 184 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 TMEM108Q6UXF1 575 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 MARCH3Q86UD3 253 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 RTN4RL2Q86UN3 420 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 BAGE3Q86Y29 109 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 BAGE2Q86Y30 109 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 CALHM1Q8IU99 346 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 KRTAP19-1Q8IUB9 90 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF547Q8IVP9 402 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF440Q8IYI8 595 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SAXO1Q8IYX7 474 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SCGB1C1Q8TD33 95 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 RTN4IP1Q8WWV3 396 aaPredicted RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ASB10Q8WXI3 467 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 OR1E3Q8WZA6 343 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ADIPOR1Q96A54 375 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 GMPPAQ96IJ6 420 aaPredicted RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 C1orf147Q96MC9 270 aaPredicted RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 UHRF2Q96PU4 802 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SPIN2AQ99865 258 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 SPIN2BQ9BPZ2 258 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 PSMG3Q9BT73 122 aaPredicted RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 OR10A2Q9H208 303 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF160Q9HCG1 818 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 CLEC5AQ9NY25 188 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 PTRH2Q9Y3E5 179 aaKnown RBP4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 CDH23Q9H251 3354 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 DOCK9Q9BZ29 2069 aa4.1□□□□□ -1.75
SNRNP40-206ENST00000489853 TRAV34A0A0B4J273 112 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 IGKV1-8A0A0C4DH67 115 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 SERTM2A0A1B0GWG4 89 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 LINC01553A4QN01 128 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 DPRXA6NFQ7 191 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 FOXI3A8MTJ6 420 aaPredicted RBP4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 B4DGG1 531 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 ZNF878C9JN71 531 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 H7C1C5 153 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 SIRPB1O00241 398 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 MPZL1O95297 269 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 STATHP02808 62 aa4.09□□□□□ -1.75
SNRNP40-206ENST00000489853 CEACAM5P06731 702 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms