RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 IFT22Q9H7X7 185 aa9.79□□□□□ -0.84
SDC3-204ENST00000487984 PCDHB16Q9NRJ7 776 aa9.79□□□□□ -0.84
SDC3-204ENST00000487984 ING4Q9UNL4 249 aa9.79□□□□□ -0.84
SDC3-204ENST00000487984 PSG11Q9UQ72 335 aa9.79□□□□□ -0.84
SDC3-204ENST00000487984 ST3GAL6Q9Y274 331 aa9.79□□□□□ -0.84
SDC3-204ENST00000487984 AMMECR1Q9Y4X0 333 aaPredicted RBP9.79□□□□□ -0.84
SDC3-204ENST00000487984 TRBV5-5A0A0J9YX44 114 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 LOC100506127A0A0U1RQW1 187 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 A0A1W2PPI3 338 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 TCRBV4S1A1TA0A5B7 111 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A18PA6NE21 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A16PA6NEW6 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A20PA6NIJ5 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A9PA6NNJ1 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A12PA8MX19 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A5PA8MXJ8 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 M0QZK8 103 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 GEMIN2O14893 280 aaKnown RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 ARL6IP5O75915 188 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 OR7C1O76099 320 aaPredicted RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 SNRNP70P08621 437 aaKnown RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A15PP0C7V4 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A13PP0C7W8 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A14PP0C7W9 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM90A24PP0C7X0 464 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FAM106CPP0CH98 169 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 IGFBP3P17936 291 aaPredicted RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 SERPINA2P20848 420 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 FGF9P31371 208 aaPredicted RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 GNG10P50151 68 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 RPS25P62851 125 aaKnown RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 DIAPH2-AS1Q14236 149 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 CD200R1LQ6Q8B3 271 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 C10orf99Q6UWK7 81 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 Q6ZPA2 131 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 THNSL2Q86YJ6 484 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 DRAM1Q8N682 238 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 OR56B4Q8NH76 319 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 TMEM203Q969S6 136 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 CHCHD6Q9BRQ6 235 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 MOB4Q9Y3A3 225 aa9.78□□□□□ -0.84
SDC3-204ENST00000487984 TSSC4Q9Y5U2 329 aaPredicted RBP9.78□□□□□ -0.84
SDC3-204ENST00000487984 A0A1W2PP11 408 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 CSTBP04080 98 aaKnown RBP9.77□□□□□ -0.85
SDC3-204ENST00000487984 PF4V1P10720 104 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 RPS11P62280 158 aaKnown RBP eCLIP9.77□□□□□ -0.85
SDC3-204ENST00000487984 MADCAM1Q13477 382 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 C9orf152Q5JTZ5 239 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 REC114Q7Z4M0 266 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 LINC00596Q86U02 117 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 OR10A7Q8NGE5 316 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 OR4X2Q8NGF9 303 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 PHF21AQ96BD5 680 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 PGLYRP3Q96LB9 341 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 KCTD7Q96MP8 289 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 S100A13Q99584 98 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 OR51E2Q9H255 320 aa9.77□□□□□ -0.85
SDC3-204ENST00000487984 TRAV8-7A0A075B6U6 113 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 A0A1W2PPE3 182 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 TMEM30CPA0ZSE6 113 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 H3BMQ9 156 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 ZNF780AO75290 641 aaPredicted RBP9.76□□□□□ -0.85
SDC3-204ENST00000487984 GPX5O75715 221 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 CD33P20138 364 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 MYL9P24844 172 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 RAB7AP51149 207 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 HES1Q14469 280 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 CTF1Q16619 201 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 Q499Y3 187 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 SLC22A6Q4U2R8 563 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 ACSM3Q53FZ2 586 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 SLC16A12Q6ZSM3 486 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 CEACAM19Q7Z692 300 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 WFDC9Q8NEX5 89 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 OR10X1Q8NGY0 326 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 NECAP2Q9NVZ3 263 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 TXNL4BQ9NX01 149 aaKnown RBP9.76□□□□□ -0.85
SDC3-204ENST00000487984 CKLFQ9UBR5 152 aa9.76□□□□□ -0.85
SDC3-204ENST00000487984 TRBV5-7A0A0A0MS05 114 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 C15orf65H3BRN8 121 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 HSD17B6O14756 317 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 PIN1P1O15428 100 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 PF4P02776 101 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 GTF2F2P13984 249 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 IGLL1P15814 213 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 TMEM11P17152 192 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 FSTP19883 344 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 GZMHP20718 246 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 VBP1P61758 197 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 LSM3P62310 102 aaKnown RBP9.75□□□□□ -0.85
SDC3-204ENST00000487984 FABP5Q01469 135 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 DOC2BQ14184 412 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 HNF4GQ14541 408 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 MPV17LQ2QL34 196 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 KHDC1LQ5JSQ8 128 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 ATAD3CQ5T2N8 411 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 OR8H3Q8N146 312 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 C5orf56Q8N8D9 126 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 UBALD1Q8TB05 177 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 CCDC107Q8WV48 283 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms