RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SERPINE2P07093 398 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 ZNF14P17017 642 aaPredicted RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 RAB5AP20339 215 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 HLA-DRB3P79483 266 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 TMEM267Q0VDI3 215 aaPredicted RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 Q6ZRM9 215 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 MDP1Q86V88 176 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 H1FOOQ8IZA3 346 aaPredicted RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 C5orf52A6NGY3 159 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 MT-CO3P00414 261 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 ACAA1P09110 424 aaPredicted RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 AGAP20933 346 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 OR2B8PP59922 312 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 RNPS1Q15287 305 aaKnown RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 RNASE11Q8TAA1 199 aaKnown RBP15.26■□□□□ 0.03
VIM-206ENST00000487938 GPR87Q9BY21 358 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 OR51I2Q9H344 312 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 PPP1R3CQ9UQK1 317 aa15.26■□□□□ 0.03
VIM-206ENST00000487938 KNTC1P50748 2209 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 A0A1W2PR80 420 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 SIRPB1O00241 398 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 SP1P08047 785 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 IL24Q13007 206 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 RHEBQ15382 184 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 RBMS3Q6XE24 437 aaKnown RBP15.25■□□□□ 0.03
VIM-206ENST00000487938 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.25■□□□□ 0.03
VIM-206ENST00000487938 ARHGAP21Q5T5U3 1957 aa15.25■□□□□ 0.03
VIM-206ENST00000487938 OR5B21A6NL26 309 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 SP9P0CG40 484 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 S100GP29377 79 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 BAXQ07812 192 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 AKR1C8PQ5T2L2 129 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 TMEM164Q5U3C3 297 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 ZNF880Q6PDB4 577 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 LINC00596Q86U02 117 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 THNSL2Q86YJ6 484 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 ZNF295-AS1Q8N0V1 137 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 OR10V1Q8NGI7 309 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 OR1K1Q8NGR3 316 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 GTF3AQ92664 365 aaKnown RBP15.24■□□□□ 0.03
VIM-206ENST00000487938 IL22RA2Q969J5 263 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 GNPNAT1Q96EK6 184 aaPredicted RBP15.24■□□□□ 0.03
VIM-206ENST00000487938 ATP5SQ99766 215 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 URB1O60287 2271 aaKnown RBP15.24■□□□□ 0.03
VIM-206ENST00000487938 TRBV6-6A0A0A6YYG2 114 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 LNP1A1A4G5 178 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 ZNF727A8MUV8 499 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 MMP9P14780 707 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 ZNF16P17020 682 aaPredicted RBP15.24■□□□□ 0.03
VIM-206ENST00000487938 SLC10A1Q14973 349 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 Q6P435 159 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 MYPOPQ86VE0 399 aaPredicted RBP15.24■□□□□ 0.03
VIM-206ENST00000487938 OPA3Q9H6K4 179 aa15.24■□□□□ 0.03
VIM-206ENST00000487938 KIAA1324LA8MWY0 1029 aaPredicted RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 M0R296 226 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 ATXN7O15265 892 aaPredicted RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 OR2C1O95371 312 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 IGKV1-39P01597 117 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 IGKV1D-39P04432 117 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 RPS23P62266 143 aaKnown RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 BCL2L2Q92843 193 aaPredicted RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 RBM7Q9Y580 266 aaKnown RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 MED12LQ86YW9 2145 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 H3BQ15 152 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 IGLV2-14P01704 120 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 CELA3BP08861 270 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 SRP19P09132 144 aaKnown RBP15.23■□□□□ 0.03
VIM-206ENST00000487938 IAPPP10997 89 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 SLC25A24Q6NUK1 477 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 WDR86Q86TI4 376 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 KIAA1456Q9P272 454 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 GPR179Q6PRD1 2367 aa15.23■□□□□ 0.03
VIM-206ENST00000487938 A0A1B0GU03 582 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 C21orf140B9A014 251 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 RPL23AP62750 156 aaKnown RBP15.22■□□□□ 0.03
VIM-206ENST00000487938 FABP9Q0Z7S8 132 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 ICAM4Q14773 271 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 ATP1A1-AS1Q5TC04 95 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 STX12Q86Y82 276 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 SNIP1Q8TAD8 396 aaKnown RBP15.22■□□□□ 0.03
VIM-206ENST00000487938 BCL2L14Q9BZR8 327 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 PKIBQ9C010 78 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 CACNG5Q9UF02 275 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 TRAPPC2LQ9UL33 140 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 H0YL77 283 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 TXNL1O43396 289 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 OR2H2O95918 312 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 TAS2R30P59541 319 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 ERVS71-1P61550 626 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 TESK1Q15569 626 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 FBXW9Q5XUX1 488 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 SLC16A13Q7RTY0 426 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 NANPQ8TBE9 248 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 CABLES2Q9BTV7 478 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 SMDT1Q9H4I9 107 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 KCNS2Q9ULS6 477 aa15.22■□□□□ 0.03
VIM-206ENST00000487938 KLRC4-KLRK1H3BQV0 150 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 J3QT63 122 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 UBE2CO00762 179 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 SCAF4O95104 1147 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms