RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 GFOD1Q9NXC2 390 aa16.34■□□□□ 0.21
HDAC4-209ENST00000487617 BLOC1S6Q9UL45 172 aa16.34■□□□□ 0.21
HDAC4-209ENST00000487617 RAB26Q9ULW5 256 aa16.34■□□□□ 0.21
HDAC4-209ENST00000487617 PKD1L1Q8TDX9 2849 aa16.34■□□□□ 0.21
HDAC4-209ENST00000487617 IGHV3-43A0A0B4J1X8 118 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 C12orf77C9JDV5 145 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 SPINT2O43291 252 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 FBXO24O75426 580 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 CA11O75493 328 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 IGHV3-43DP0DP04 118 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 VSIG8P0DPA2 414 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 CPEP16870 476 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 PSMA1P25786 263 aaKnown RBP16.33■□□□□ 0.2
HDAC4-209ENST00000487617 HTR2CP28335 458 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 NKAPLQ5M9Q1 402 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 GAPTQ8N292 157 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 DRAM1Q8N682 238 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 OR56B4Q8NH76 319 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 NEDD4LQ96PU5 975 aa16.33■□□□□ 0.2
HDAC4-209ENST00000487617 A0A1W2PPI3 338 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 SLC22A1O15245 554 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 SNRNP70P08621 437 aaKnown RBP16.32■□□□□ 0.2
HDAC4-209ENST00000487617 LOXL3P58215 753 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 ABCA11PQ4W5N1 156 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 FAM53AQ6NSI3 398 aaPredicted RBP16.32■□□□□ 0.2
HDAC4-209ENST00000487617 TRAT1Q6PIZ9 186 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 THNSL2Q86YJ6 484 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 OR8H3Q8N146 312 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 PRR18Q8N4B5 295 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 KCNG3Q8TAE7 436 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 CYYR1Q96J86 154 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 OCSTAMPQ9BR26 566 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 TMEM59Q9BXS4 323 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 WNT10AQ9GZT5 417 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 KCNK15Q9H427 330 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 WNK1Q9H4A3 2382 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 GNG12Q9UBI6 72 aa16.32■□□□□ 0.2
HDAC4-209ENST00000487617 FAM90A9PA6NNJ1 464 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 CCRL2O00421 344 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 HSD17B6O14756 317 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 ARL6IP5O75915 188 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 HBZP02008 142 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 CD28P10747 220 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 CD37P11049 281 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 RCC1P18754 421 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-209ENST00000487617 RPS27AP62979 156 aaKnown RBP16.31■□□□□ 0.2
HDAC4-209ENST00000487617 HES1Q14469 280 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 TBCEQ15813 527 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-209ENST00000487617 LINC00311Q8N616 119 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 OR6M1Q8NGM8 313 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 OR1L1Q8NH94 360 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 PLGRKTQ9HBL7 147 aa16.31■□□□□ 0.2
HDAC4-209ENST00000487617 TET2Q6N021 2002 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-209ENST00000487617 M0QZK8 103 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 BPNT1O95861 308 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 GAPDHP04406 335 aaKnown RBP16.3■□□□□ 0.2
HDAC4-209ENST00000487617 LPLP06858 475 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 CHATP28329 748 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 FABP5Q01469 135 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 ZNF816Q0VGE8 651 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-209ENST00000487617 TMEM30BQ3MIR4 351 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 ZNF367Q7RTV3 350 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 LYG1Q8N1E2 194 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 C8orf31Q8N9H6 132 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 OR10V1Q8NGI7 309 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 WIPF2Q8TF74 440 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-209ENST00000487617 TAF9BQ9HBM6 251 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 KCNIP1Q9NZI2 227 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 MOB4Q9Y3A3 225 aa16.3■□□□□ 0.2
HDAC4-209ENST00000487617 AK6Q9Y3D8 172 aaKnown RBP16.3■□□□□ 0.2
HDAC4-209ENST00000487617 SH2D7A6NKC9 451 aaPredicted RBP16.29■□□□□ 0.2
HDAC4-209ENST00000487617 TMEM14DPA8MWL7 114 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 AMY1AP04745 511 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 AMY2AP04746 511 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 TMEM11P17152 192 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 IL3RAP26951 378 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 CALRP27797 417 aaKnown RBP16.29■□□□□ 0.2
HDAC4-209ENST00000487617 REG1BP48304 166 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 UNC119Q13432 240 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 HNF4GQ14541 408 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 P2RY14Q15391 338 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 NSUN5P1Q3KNT7 163 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 Q3ZCU0 254 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 C9orf152Q5JTZ5 239 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 MOB3BQ86TA1 216 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 MRPL30Q8TCC3 161 aaKnown RBP16.29■□□□□ 0.2
HDAC4-209ENST00000487617 GFI1Q99684 422 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 SULT4A1Q9BR01 284 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 TM2D1Q9BX74 207 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 ACOT13Q9NPJ3 140 aa16.29■□□□□ 0.2
HDAC4-209ENST00000487617 MBNL3Q9NUK0 354 aaKnown RBP16.29■□□□□ 0.2
HDAC4-209ENST00000487617 IGHV1-3A0A0C4DH29 117 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 SLC17A2O00624 439 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 SLC31A2O15432 143 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 IGKV1D-33P01593 117 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 IGKV1-33P01594 117 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 QRFPP83859 136 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 C6orf201Q7Z4U5 140 aa16.28■□□□□ 0.2
HDAC4-209ENST00000487617 CITED2Q99967 270 aaPredicted RBP16.28■□□□□ 0.2
HDAC4-209ENST00000487617 NICN1Q9BSH3 213 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms