RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MFSD2BA6NFX1 497 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 FAM74A7A6NL05 159 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF383Q8NA42 475 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 GSX1Q9H4S2 264 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 TRBV5-7A0A0A0MS05 114 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 TNXAQ16473 311 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 FAM27BQ5VT28 67 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 MRPL30Q8TCC3 161 aaKnown RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 PITPNC1Q9UKF7 332 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 TMEM210A6NLX4 147 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 TSPAN2O60636 221 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 TCL1AP56279 114 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 GUCA2BQ16661 112 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF71Q9NQZ8 489 aaPredicted RBP14.33□□□□□ -0.11
COL7A1-210ENST00000487017 BET1LQ9NYM9 111 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 GPR132Q9UNW8 380 aa14.33□□□□□ -0.11
COL7A1-210ENST00000487017 TRAV38-1A0A0B4J264 116 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 ISG15P05161 165 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 IFI6P09912 130 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 HIKESHIQ53FT3 197 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 DEFB124Q8NES8 71 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 PGA4P0DJD7 388 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 PGA5P0DJD9 388 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 TGIF2LYQ8IUE0 185 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 OR1K1Q8NGR3 316 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 MYO16Q9Y6X6 1858 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 MS4A18H0YCH9 400 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 ELOBQ15370 118 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 MS4A18Q3C1V0 323 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 HES3Q5TGS1 186 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 THYN1Q9P016 225 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 ASCC3Q8N3C0 2202 aaKnown RBP14.33□□□□□ -0.12
COL7A1-210ENST00000487017 UBE2V2Q15819 145 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 C1orf100Q5SVJ3 147 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 H1FOOQ8IZA3 346 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-210ENST00000487017 FAM181AQ8N9Y4 354 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF519Q8TB69 540 aa14.33□□□□□ -0.12
COL7A1-210ENST00000487017 TRAV39A0A0B4J263 110 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 CXorf1O96002 111 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 Q6ZN92 141 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 PRNDQ9UKY0 176 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 CIDEAO60543 219 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 LILRB1Q8NHL6 650 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-210ENST00000487017 OR10C1Q96KK4 312 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 SMOC1Q9H4F8 434 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 IGLV1-36A0A0B4J1U3 117 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 CD81P60033 236 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF273Q14593 569 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-210ENST00000487017 MOGAT3Q86VF5 341 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 AQP3Q92482 292 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 IGKV3-7A0A075B6H7 116 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF98A6NK75 572 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 C4orf51C9J302 202 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 FAM87AP0C7U9 286 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 TFF2Q03403 129 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 SLC25A40Q8TBP6 338 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 ZNF501Q96CX3 271 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-210ENST00000487017 SRD5A3Q9H8P0 318 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 C21orf140B9A014 251 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 TMPRSS2O15393 492 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 SRSF10O75494 262 aaKnown RBP14.32□□□□□ -0.12
COL7A1-210ENST00000487017 UNQ9370/PRO34162Q6UXP9 181 aa14.32□□□□□ -0.12
COL7A1-210ENST00000487017 PIN1P1O15428 100 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 NAT2P11245 290 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 B2MP61769 119 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 CEBPEQ15744 281 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 ANKRD55Q3KP44 614 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 OR5AU1Q8NGC0 362 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 KCNK17Q96T54 332 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 KCNE5Q9UJ90 142 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 AGFG2O95081 481 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 FAM157CP0CG43 387 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 MMP9P14780 707 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 HOXA6P31267 233 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 CEACAM3P40198 252 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 TMEM255AQ5JRV8 349 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 GRAMD2BQ96HH9 432 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 NSUN5P2Q63ZY6 315 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 DGAT2L7PQ6IED9 249 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 SLC22A18ASQ8N1D0 253 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 CFDP00746 253 aaPredicted RBP14.31□□□□□ -0.12
COL7A1-210ENST00000487017 BCL2P10415 239 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 OR10J1P30954 320 aa14.31□□□□□ -0.12
COL7A1-210ENST00000487017 DUSP15Q9H1R2 295 aaPredicted RBP14.31□□□□□ -0.12
COL7A1-210ENST00000487017 HELTA6NFD8 242 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 OR4A8P0C604 315 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 PSMB2P49721 201 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 PUSL1Q8N0Z8 303 aaKnown RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 SCN3AQ9NY46 2000 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 A0A1W2PP11 408 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 PKIAP61925 76 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 TMEM191AQ9H0A3 160 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 RNF7Q9UBF6 113 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 PRSS1P07477 247 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 SERF2P84101 59 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 ZXDCQ2QGD7 858 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-210ENST00000487017 OR11H4Q8NGC9 324 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 COA4Q9NYJ1 87 aa14.3□□□□□ -0.12
COL7A1-210ENST00000487017 TRIP12Q14669 1992 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms