RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PPIL3Q9H2H8 161 aaKnown RBP6.57□□□□□ -1.36
USP40-216ENST00000485943 BEX1Q9HBH7 125 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 DAPK2Q9UIK4 370 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 RAB22AQ9UL26 194 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 MGAT4AQ9UM21 535 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 NOTOA8MTQ0 251 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 IL1AP01583 271 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 MELTFP08582 738 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 RPS27AP62979 156 aaKnown RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 SLC9A3R2Q15599 337 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 SSX1Q16384 188 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 KRTAP24-1Q3LI83 254 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 TMEM30BQ3MIR4 351 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 C1orf100Q5SVJ3 147 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 IDNKQ5T6J7 187 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 MINOS1Q5TGZ0 78 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 ASPHD2Q6ICH7 369 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 HEPN1Q6WQI6 88 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 ASCL4Q6XD76 172 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 MOB1BQ7L9L4 216 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 LRRTM1Q86UE6 522 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 WFDC3Q8IUB2 231 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 Q8N7P7 452 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 OR4C13Q8NGP0 309 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 OR13A1Q8NGR1 328 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 OR9G1Q8NH87 305 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 DYRK2Q92630 601 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 GALMQ96C23 342 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 RAB3CQ96E17 227 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 CMSS1Q9BQ75 279 aaKnown RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 RIMS4Q9H426 269 aaPredicted RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 UNKLQ9H9P5 680 aaKnown RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 OR2S2Q9NQN1 319 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 TXNL4BQ9NX01 149 aaKnown RBP6.56□□□□□ -1.36
USP40-216ENST00000485943 DPM3Q9P2X0 92 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 VPREB3Q9UKI3 123 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 MINOS1-NBL1R4GNA1 71 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 DSCAML1Q8TD84 2053 aa6.56□□□□□ -1.36
USP40-216ENST00000485943 TRAV39A0A0B4J263 110 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 A0A1B0GUS0 222 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 SMIM31A0A1B0GVY4 71 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 CCDC160A6NGH7 325 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 IFITM5A6NNB3 132 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 SLC22A1O15245 554 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 FSHBP01225 129 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 IGHV3-7P01780 117 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 IGHV4-59P01825 116 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 RNASE1P07998 156 aaKnown RBP6.55□□□□□ -1.36
USP40-216ENST00000485943 SSTR5P35346 364 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 RAG2P55895 527 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 GNG2P59768 71 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 LSM3P62310 102 aaKnown RBP6.55□□□□□ -1.36
USP40-216ENST00000485943 MADCAM1Q13477 382 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 C2orf76Q3KRA6 126 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 C9orf152Q5JTZ5 239 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 RSBN1Q5VWQ0 802 aaPredicted RBP6.55□□□□□ -1.36
USP40-216ENST00000485943 TMEM91Q6ZNR0 172 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 GPR141Q7Z602 305 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 BEND2Q8NDZ0 799 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 TMEM104Q8NE00 496 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 OR10A7Q8NGE5 316 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 OR10V1Q8NGI7 309 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 OR2T6Q8NHC8 308 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 CORO2AQ92828 525 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 DACT3Q96B18 629 aaPredicted RBP6.55□□□□□ -1.36
USP40-216ENST00000485943 COQ2Q96H96 371 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 FAAP24Q9BTP7 215 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 CENPOQ9BU64 300 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 MRPS26Q9BYN8 205 aaKnown RBP6.55□□□□□ -1.36
USP40-216ENST00000485943 NPFFR1Q9GZQ6 430 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 OR51E2Q9H255 320 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 IFT22Q9H7X7 185 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 DIABLOQ9NR28 239 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 ZNRD1Q9P1U0 126 aa6.55□□□□□ -1.36
USP40-216ENST00000485943 ZFHX3Q15911 3703 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 IGHV3-43A0A0B4J1X8 118 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 CLDN34H7C241 214 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ORC5O43913 435 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 GPR137BO60478 399 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 SC5DO75845 299 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 FAM106CPP0CH98 169 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 IGHV3-43DP0DP04 118 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 FGF9P31371 208 aaPredicted RBP6.54□□□□□ -1.36
USP40-216ENST00000485943 SDC2P34741 201 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 SOX6P35712 828 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 IER3P46695 156 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 SERPINB10P48595 397 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 RAB7AP51149 207 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 OR10A3P58181 314 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 RPL15P61313 204 aaKnown RBP6.54□□□□□ -1.36
USP40-216ENST00000485943 CBX3Q13185 183 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ZNF626Q68DY1 528 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ZNF497Q6ZNH5 498 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 SLC16A12Q6ZSM3 486 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 C6orf201Q7Z4U5 140 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 MOB3BQ86TA1 216 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 LDLRAD3Q86YD5 345 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ZDHHC22Q8N966 263 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 Q8NFD4 153 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms