RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 ARPC4-TTLL3A0A0A6YYG9 625 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 H0YIV9 168 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 CLDN34H7C241 214 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 CASC3O15234 703 aaKnown RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TTC4O95801 387 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 PTTG1O95997 202 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TNFP01375 233 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 CTSEP14091 401 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TUBG1P23258 451 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 IL3RAP26951 378 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 MIPP30301 263 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 PSMD4P55036 377 aaKnown RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TAS2R39P59534 338 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 RHOAP61586 193 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 CCL7P80098 99 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 RPL18AQ02543 176 aaKnown RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 ELOCQ15369 112 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 SP6Q3SY56 376 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 SPIN3Q5JUX0 258 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 HHATQ5VTY9 493 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 PPP1R2P3Q6NXS1 205 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 ULK3Q6PHR2 472 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 LINC00336Q6ZUF6 198 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 MRPL21Q7Z2W9 205 aaKnown RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 NAP1L5Q96NT1 182 aaPredicted RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 MCEEQ96PE7 176 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 ARV1Q9H2C2 271 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 HAUS4Q9H6D7 363 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 ASCL3Q9NQ33 180 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TUBG2Q9NRH3 451 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 ZNF391Q9UJN7 358 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 MUC22E2RYF6 1773 aaPredicted RBP2.4□□□□□ -2.03
PTCD3-211ENST00000476215 RP1P56715 2156 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 UNC13CQ8NB66 2214 aa2.4□□□□□ -2.03
PTCD3-211ENST00000476215 TEX15Q9BXT5 2789 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PLXNA2O75051 1894 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 TMEM131Q92545 1883 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 LRRK2Q5S007 2527 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 RELNP78509 3460 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 MYLKQ15746 1914 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 IGHV6-1A0A0B4J1U7 121 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 DFFAO00273 331 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 CBR3O75828 277 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 TNFSF15O95150 251 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PRB1P04280 392 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PFN1P07737 140 aaKnown RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 SFTPCP11686 197 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 MPIP34949 423 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 ANP32AP39687 249 aaKnown RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 TPI1P60174 286 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 AP1S1P61966 158 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 SLC35A1P78382 337 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 LCN2P80188 198 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 IHHQ14623 411 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 KCTD16Q68DU8 428 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 GKN2Q86XP6 184 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 SLC26A10Q8NG04 563 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 OR10Z1Q8NGY1 313 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PEBP4Q96S96 227 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 TBL1XR1Q9BZK7 514 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 OR2AG1Q9H205 316 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 FANCEQ9HB96 536 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 MRPL40Q9NQ50 206 aaKnown RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 CA10Q9NS85 328 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 DDX18Q9NVP1 670 aaKnown RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 RABL2AQ9UBK7 228 aaPredicted RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PSME2Q9UL46 239 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 PPIL1Q9Y3C6 166 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 BZW2Q9Y6E2 419 aaKnown RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 COL5A1P20908 1838 aaPredicted RBP2.39□□□□□ -2.03
PTCD3-211ENST00000476215 DOCK4Q8N1I0 1966 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 COL6A6A6NMZ7 2263 aa2.39□□□□□ -2.03
PTCD3-211ENST00000476215 NBASA2RRP1 2371 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 CHD5Q8TDI0 1954 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 USP9YO00507 2555 aaPredicted RBP2.38□□□□□ -2.03
PTCD3-211ENST00000476215 A0A087X0T9 212 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 IGKV1-6A0A0C4DH72 117 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 IGKV1-39P01597 117 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 IGKV1D-39P04432 117 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 IVLP07476 585 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 SLC35G6P0C7Q6 338 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 FAM228BP0C875 321 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 COL8A2P25067 703 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 TEAD1P28347 426 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 HSPA9P38646 679 aaKnown RBP2.38□□□□□ -2.03
PTCD3-211ENST00000476215 MTPNP58546 118 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 EIF3IQ13347 325 aaKnown RBP2.38□□□□□ -2.03
PTCD3-211ENST00000476215 ZNF235Q14590 738 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 MAPRE2Q15555 327 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 TAF9Q16594 264 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 SDK2Q58EX2 2172 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 CCDC122Q5T0U0 273 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 MORN3Q6PF18 240 aaPredicted RBP2.38□□□□□ -2.03
PTCD3-211ENST00000476215 FAM131AQ6UXB0 335 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 PDPNQ86YL7 162 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 SLC7A5P1Q8MH63 180 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 LINC00469Q8N7U9 141 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 CCL4L1Q8NHW4 92 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 TVP23CQ96ET8 276 aa2.38□□□□□ -2.03
PTCD3-211ENST00000476215 MRPL48Q96GC5 212 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms