RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TRAT1Q6PIZ9 186 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 UNQ9370/PRO34162Q6UXP9 181 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 TGIF2LXQ8IUE1 241 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 PACRGLQ8N7B6 248 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 OR10V1Q8NGI7 309 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 OR4K15Q8NH41 348 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 MCRIP2Q9BUT9 160 aaKnown RBP13.89□□□□□ -0.19
COL7A1-206ENST00000466591 ZFP57Q9NU63 452 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 GFOD1Q9NXC2 390 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 PEX16Q9Y5Y5 336 aa13.89□□□□□ -0.19
COL7A1-206ENST00000466591 TRAV8-7A0A075B6U6 113 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 TRBV5-5A0A0J9YX44 114 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 AP4M1O00189 453 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 TXNL1O43396 289 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 LALBAP00709 142 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 MT-ND4P03905 459 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 CELP19835 753 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 RCN1Q15293 331 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 TMEM30BQ3MIR4 351 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 ZNF497Q6ZNH5 498 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 C8orf86Q6ZUL3 223 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 AHSA2Q719I0 299 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 EAF1Q96JC9 268 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-206ENST00000466591 BANF2Q9H503 90 aa13.88□□□□□ -0.19
COL7A1-206ENST00000466591 MAGEA13PA6NCF6 341 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 MOSP00540 346 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 IGFBP3P17936 291 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 FSTP19883 344 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 SLC6A1P30531 599 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 HOXD3P31249 432 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 DOC2BQ14184 412 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 CXorf66Q5JRM2 361 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 TEX38Q6PEX7 206 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 OR2W3Q7Z3T1 314 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 IZUMO1Q8IYV9 350 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 STPG2Q8N412 459 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 NKAIN3Q8N8D7 197 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 RTN4IP1Q8WWV3 396 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 TFAP2CQ92754 450 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 GGHQ92820 318 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 CST11Q9H112 138 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 LIN7CQ9NUP9 197 aaKnown RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 ZMAT5Q9UDW3 170 aaKnown RBP13.87□□□□□ -0.19
COL7A1-206ENST00000466591 ERGIC3Q9Y282 383 aa13.87□□□□□ -0.19
COL7A1-206ENST00000466591 UBE2QL1A1L167 161 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 C12orf77C9JDV5 145 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 C15orf65H3BRN8 121 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 IGHG2P01859 326 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 MGMTP16455 207 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 VDAC1P21796 283 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 WNT4P56705 351 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 GPR50Q13585 617 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 NKAPLQ5M9Q1 402 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 ZNF695Q8IW36 515 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 MRPL41Q8IXM3 137 aaKnown RBP13.86□□□□□ -0.19
COL7A1-206ENST00000466591 LINC00311Q8N616 119 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 BPIFB6Q8NFQ5 453 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 FAM46BQ96A09 425 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 OR2S2Q9NQN1 319 aa13.86□□□□□ -0.19
COL7A1-206ENST00000466591 CNOT2Q9NZN8 540 aaKnown RBP13.86□□□□□ -0.19
COL7A1-206ENST00000466591 CA11O75493 328 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 GPX5O75715 221 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 HBZP02008 142 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 MYCNOSP40205 109 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 GPR12P47775 334 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 Q3ZCU0 254 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 CDH26Q8IXH8 852 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 LINC00482Q8N8I6 264 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 C8orf31Q8N9H6 132 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 PGLYRP3Q96LB9 341 aa13.85□□□□□ -0.19
COL7A1-206ENST00000466591 FUT3P21217 361 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 CD1BP29016 333 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 SOX6P35712 828 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 THBS3P49746 956 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 DCTN2Q13561 401 aaKnown RBP13.84□□□□□ -0.19
COL7A1-206ENST00000466591 PNLIPRP3Q17RR3 467 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 OR8H1Q8NGG4 311 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 OR1L1Q8NH94 360 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 NEDD4LQ96PU5 975 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 DERL3Q96Q80 235 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 ABCG5Q9H222 651 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 TAF9BQ9HBM6 251 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 ABRACLQ9P1F3 81 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 RCC2Q9P258 522 aaKnown RBP13.84□□□□□ -0.19
COL7A1-206ENST00000466591 NOTCH3Q9UM47 2321 aa13.84□□□□□ -0.19
COL7A1-206ENST00000466591 TRBV5-7A0A0A0MS05 114 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 FAM90A10PA6NDY2 464 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 FAM90A7PA6NKC0 464 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 FAM90A23PA8MXZ1 464 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 RGS11O94810 467 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 MYF6P23409 242 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 RPS11P62280 158 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL7A1-206ENST00000466591 ADARB1P78563 741 aaKnown RBP13.83□□□□□ -0.2
COL7A1-206ENST00000466591 CD69Q07108 199 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 RBM48Q5RL73 367 aaKnown RBP13.83□□□□□ -0.2
COL7A1-206ENST00000466591 SLC25A48Q6ZT89 311 aaKnown RBP13.83□□□□□ -0.2
COL7A1-206ENST00000466591 SETD6Q8TBK2 473 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 S1PR3Q99500 378 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 UQCC2Q9BRT2 126 aa13.83□□□□□ -0.2
COL7A1-206ENST00000466591 MND1Q9BWT6 205 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms