RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LAIR2Q6ISS4 152 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 TRAT1Q6PIZ9 186 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 IZUMO1Q8IYV9 350 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 PRR18Q8N4B5 295 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 LINC00311Q8N616 119 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 NANOGP1Q8N7R0 232 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 C8orf31Q8N9H6 132 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 SGCDQ92629 289 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 PHF21AQ96BD5 680 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 UQCC2Q9BRT2 126 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 SELENOIQ9C0D9 397 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 CST11Q9H112 138 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 BANF2Q9H503 90 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 FKBP14Q9NWM8 211 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 GNG12Q9UBI6 72 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 C12orf77C9JDV5 145 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 TXNL1O43396 289 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 CA11O75493 328 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 PRB2P02812 416 aaPredicted RBP11.07□□□□□ -0.64
USP4-206ENST00000461553 MT-ND4P03905 459 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 SLC35A2P78381 396 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 GABPB1Q06547 395 aaPredicted RBP11.07□□□□□ -0.64
USP4-206ENST00000461553 HNF4GQ14541 408 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 RBM48Q5RL73 367 aaKnown RBP11.07□□□□□ -0.64
USP4-206ENST00000461553 SYT6Q5T7P8 510 aaPredicted RBP11.07□□□□□ -0.64
USP4-206ENST00000461553 C10orf99Q6UWK7 81 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 OR4K15Q8NH41 348 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 CHPT1Q8WUD6 406 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 Q96M66 194 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 NECAP2Q9NVZ3 263 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 PEX16Q9Y5Y5 336 aa11.07□□□□□ -0.64
USP4-206ENST00000461553 IGHV3-72A0A0B4J1Y9 119 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 SERPINE3A8MV23 424 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 PIN1P1O15428 100 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 CDK1P06493 297 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 LOXL3P58215 753 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 SLC35E3Q7Z769 313 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 FOXRED2Q8IWF2 684 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 MS4A15Q8N5U1 240 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 TMEM104Q8NE00 496 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 OR51D1Q8NGF3 324 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 OR10V1Q8NGI7 309 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 RTN4IP1Q8WWV3 396 aaPredicted RBP11.06□□□□□ -0.64
USP4-206ENST00000461553 TFAP2CQ92754 450 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 FAM46BQ96A09 425 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 SCN3BQ9NY72 215 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 GHRLQ9UBU3 117 aa11.06□□□□□ -0.64
USP4-206ENST00000461553 NCBP2LA6PVI3 153 aaKnown RBP11.05□□□□□ -0.64
USP4-206ENST00000461553 PDCD6O75340 191 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 SC5DO75845 299 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 MPIG6BO95866 241 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 HBZP02008 142 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 GLAP06280 429 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 UBBP0CG47 229 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 FUT3P21217 361 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 SLC35B1P78383 322 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 NKAPLQ5M9Q1 402 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 RNLSQ5VYX0 342 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 GLT8D1Q68CQ7 371 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 SLC25A48Q6ZT89 311 aaKnown RBP11.05□□□□□ -0.64
USP4-206ENST00000461553 ZNF329Q86UD4 541 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 TGIF2LXQ8IUE1 241 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 GAPTQ8N292 157 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 OR2T10Q8NGZ9 312 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 MRAPQ8TCY5 172 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 EAF1Q96JC9 268 aaPredicted RBP11.05□□□□□ -0.64
USP4-206ENST00000461553 NOL4LQ96MY1 436 aaPredicted RBP11.05□□□□□ -0.64
USP4-206ENST00000461553 TMED9Q9BVK6 235 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 DCLRE1BQ9H816 532 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 KCNIP1Q9NZI2 227 aa11.05□□□□□ -0.64
USP4-206ENST00000461553 UBE2QL1A1L167 161 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 ANKRD65E5RJM6 399 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 SLC31A2O15432 143 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 IGHG2P01859 326 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 IGLL1P15814 213 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 VHLP40337 213 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 ZNF137PP52743 207 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 RPL23AP62750 156 aaKnown RBP11.04□□□□□ -0.64
USP4-206ENST00000461553 EBI3Q14213 229 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 INSL4Q14641 139 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 MED22Q15528 200 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 ACSM3Q53FZ2 586 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 LYPD6Q86Y78 171 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 ZNF439Q8NDP4 499 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 OR1L1Q8NH94 360 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 RCC1LQ96I51 464 aaKnown RBP11.04□□□□□ -0.64
USP4-206ENST00000461553 TMEM59Q9BXS4 323 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 OR2S2Q9NQN1 319 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 LIN7CQ9NUP9 197 aaKnown RBP11.04□□□□□ -0.64
USP4-206ENST00000461553 AURKAIP1Q9NWT8 199 aaPredicted RBP11.04□□□□□ -0.64
USP4-206ENST00000461553 JPT1Q9UK76 154 aa11.04□□□□□ -0.64
USP4-206ENST00000461553 NUDT19A8MXV4 375 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 PTGES3LE9PB15 166 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 AP4M1O00189 453 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 DUS4LO95620 317 aaKnown RBP11.03□□□□□ -0.64
USP4-206ENST00000461553 MOSP00540 346 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 RCC1P18754 421 aaPredicted RBP11.03□□□□□ -0.64
USP4-206ENST00000461553 CD1BP29016 333 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 AQP4P55087 323 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 SPHARQ15513 63 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms