RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RPUSD4Q96CM3 377 aaKnown RBP10.02□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF552Q9H707 407 aaPredicted RBP10.02□□□□□ -0.81
NPHP4-204ENST00000460696 JMJD1CQ15652 2540 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 J3QT63 122 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SPRY3O43610 288 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 CDS2O95674 445 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ACP1P24666 158 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FHITP49789 147 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 RAB31Q13636 194 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 Q8IYB0 196 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 TPRX1Q8N7U7 411 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 RNF126Q9BV68 326 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 hCG_38984A0A1B0GV85 526 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PINLYPA6NC86 204 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF727A8MUV8 499 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 E9PLN8 166 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SRSF10O75494 262 aaKnown RBP10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ACTL6BO94805 426 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 NPBWR1P48145 328 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PDZD11Q5EBL8 140 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 CPEB3Q8NE35 698 aaKnown RBP10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PFDN5Q99471 154 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SLC35B3Q9H1N7 401 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 OR2D2Q9H210 308 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FBLN5Q9UBX5 448 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 WSB1Q9Y6I7 421 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FREM1Q5H8C1 2179 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FAM90A27PA6NNH2 459 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 A8MXK9 166 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF883P0CG24 379 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PSG2P11465 335 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 NDUFB7P17568 137 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ATP6V0CP27449 155 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 HOXA1P49639 335 aaPredicted RBP10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FOXG1P55316 489 aaPredicted RBP10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SMIM21Q3B7S5 101 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SPACA3Q8IXA5 215 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 ADAMTS17Q8TE56 1095 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 MOB3AQ96BX8 217 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 TM2D1Q9BX74 207 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 SEC11CQ9BY50 192 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PLEKHA3Q9HB20 300 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PNRC2Q9NPJ4 139 aaKnown RBP10.01□□□□□ -0.81
NPHP4-204ENST00000460696 IL36RNQ9UBH0 155 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 PSG11Q9UQ72 335 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 OR2W1Q9Y3N9 320 aa10.01□□□□□ -0.81
NPHP4-204ENST00000460696 FGF8P55075 233 aaPredicted RBP10□□□□□ -0.81
NPHP4-204ENST00000460696 H3F3AP84243 136 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 EIF2S3LQ2VIR3 472 aaKnown RBP10□□□□□ -0.81
NPHP4-204ENST00000460696 AWAT1Q58HT5 328 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 LIPGQ9Y5X9 500 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 TLN2Q9Y4G6 2542 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 CCL1P22362 96 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 SULT1A2P50226 295 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 TAS2R30P59541 319 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 BTNL3Q6UXE8 466 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 OR1K1Q8NGR3 316 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 NABP1Q96AH0 204 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 C12orf57Q99622 126 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 POMT1Q9Y6A1 747 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 PTPRSQ13332 1948 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF716A6NP11 495 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 C3orf80F5H4A9 247 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 SNCAP37840 140 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 PMELP40967 661 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 PSMB3P49720 205 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 SNRPEP62304 92 aaKnown RBP10□□□□□ -0.81
NPHP4-204ENST00000460696 TP53RKQ96S44 253 aa10□□□□□ -0.81
NPHP4-204ENST00000460696 RCC2Q9P258 522 aaKnown RBP10□□□□□ -0.81
NPHP4-204ENST00000460696 C9orf172C9J069 976 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 NTN3O00634 580 aaPredicted RBP9.99□□□□□ -0.81
NPHP4-204ENST00000460696 SYNGR2O43760 224 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 RPP30P78346 268 aaKnown RBP9.99□□□□□ -0.81
NPHP4-204ENST00000460696 Q3ZCU0 254 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 C4orf17Q53FE4 359 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF826PQ6ZT77 177 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 FAM89BQ8N5H3 189 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 TMEM252Q8N6L7 170 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 NECAP1Q8NC96 275 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 RAB40CQ96S21 281 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 DDA1Q9BW61 102 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 ARV1Q9H2C2 271 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 HIPK2Q9H2X6 1198 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF703Q9H7S9 590 aaPredicted RBP9.99□□□□□ -0.81
NPHP4-204ENST00000460696 DYNLRB1Q9NP97 96 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 NIT2Q9NQR4 276 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 C7orf77A4D0Y5 90 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 HLA-DRB3P79483 266 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 AESQ08117 197 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 HIST2H3AQ71DI3 136 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 COMMD1Q8N668 190 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 H1FXQ92522 213 aaKnown RBP9.99□□□□□ -0.81
NPHP4-204ENST00000460696 PRDM14Q9GZV8 571 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 PARP11Q9NR21 331 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 ZNF581Q9P0T4 197 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 SEC11BP0C7V7 166 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 BMP5P22003 454 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 CTSSP25774 331 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 KCNJ3P48549 501 aa9.99□□□□□ -0.81
NPHP4-204ENST00000460696 QRFPP83859 136 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms