RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LRRTM1Q86UE6 522 aa16.93■□□□□ 0.3
HMGB3-205ENST00000455596 NDUFA11Q86Y39 141 aa16.93■□□□□ 0.3
HMGB3-205ENST00000455596 DRAM1Q8N682 238 aa16.93■□□□□ 0.3
HMGB3-205ENST00000455596 FAM46BQ96A09 425 aa16.93■□□□□ 0.3
HMGB3-205ENST00000455596 MOB4Q9Y3A3 225 aa16.93■□□□□ 0.3
HMGB3-205ENST00000455596 IGHV3-43A0A0B4J1X8 118 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 HSD17B6O14756 317 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 SPINT2O43291 252 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 OPN1MWP04001 364 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 AMY1AP04745 511 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 AMY2AP04746 511 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 HSMCR30P0CW71 290 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 OPN1MW2P0DN77 364 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 OPN1MW3P0DN78 364 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 IGHV3-43DP0DP04 118 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 SRMP19623 302 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 ZNF816Q0VGE8 651 aaPredicted RBP16.92■□□□□ 0.3
HMGB3-205ENST00000455596 HES1Q14469 280 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 Q3ZCU0 254 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 LIPKQ5VXJ0 399 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 SIGIRRQ6IA17 410 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 GAPTQ8N292 157 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 LINC00311Q8N616 119 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 C8orf31Q8N9H6 132 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 CITED2Q99967 270 aaPredicted RBP16.92■□□□□ 0.3
HMGB3-205ENST00000455596 CCDC90BQ9GZT6 254 aa16.92■□□□□ 0.3
HMGB3-205ENST00000455596 UBE2QL1A1L167 161 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 C12orf77C9JDV5 145 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 PDCD6O75340 191 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 MPIG6BO95866 241 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 GAPDHP04406 335 aaKnown RBP16.91■□□□□ 0.3
HMGB3-205ENST00000455596 TMEM11P17152 192 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 CRHBPP24387 322 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 HSPA13P48723 471 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 TMEM30BQ3MIR4 351 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 C1orf100Q5SVJ3 147 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 IZUMO2Q6UXV1 221 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 CENPVQ7Z7K6 275 aaPredicted RBP16.91■□□□□ 0.3
HMGB3-205ENST00000455596 OR5AU1Q8NGC0 362 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 ISYNA1Q9NPH2 558 aa16.91■□□□□ 0.3
HMGB3-205ENST00000455596 SH2D7A6NKC9 451 aaPredicted RBP16.9■□□□□ 0.3
HMGB3-205ENST00000455596 CCRL2O00421 344 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 UCHL1P09936 223 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 IL3RAP26951 378 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 TPBGQ13641 420 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 TRAM1Q15629 374 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 PDLIM3Q53GG5 364 aaPredicted RBP16.9■□□□□ 0.3
HMGB3-205ENST00000455596 C9orf152Q5JTZ5 239 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 PRR18Q8N4B5 295 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 TMEM203Q969S6 136 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 GNG12Q9UBI6 72 aa16.9■□□□□ 0.3
HMGB3-205ENST00000455596 VWFP04275 2813 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 MEGF8Q7Z7M0 2845 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 IGHV1-3A0A0C4DH29 117 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 IGKV1D-33P01593 117 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 IGKV1-33P01594 117 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 HBZP02008 142 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 VSIG8P0DPA2 414 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 RCC1P18754 421 aaPredicted RBP16.89■□□□□ 0.29
HMGB3-205ENST00000455596 HTR2CP28335 458 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 MLLT11Q13015 90 aaPredicted RBP16.89■□□□□ 0.29
HMGB3-205ENST00000455596 FAM53AQ6NSI3 398 aaPredicted RBP16.89■□□□□ 0.29
HMGB3-205ENST00000455596 PRSS48Q7RTY5 328 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 MOB3BQ86TA1 216 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 OR4F17Q8NGA8 305 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 NEDD4LQ96PU5 975 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 OR4F4Q96R69 305 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 TMEM59Q9BXS4 323 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 MBNL3Q9NUK0 354 aaKnown RBP16.89■□□□□ 0.29
HMGB3-205ENST00000455596 KCNIP1Q9NZI2 227 aa16.89■□□□□ 0.29
HMGB3-205ENST00000455596 ADARB2-AS1A8MUL3 147 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 CPEP16870 476 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 PSMA1P25786 263 aaKnown RBP16.88■□□□□ 0.29
HMGB3-205ENST00000455596 REG1BP48304 166 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 RPS25P62851 125 aaKnown RBP16.88■□□□□ 0.29
HMGB3-205ENST00000455596 NKAPLQ5M9Q1 402 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 OR10K2Q6IF99 312 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 C1QL4Q86Z23 238 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 OR1L1Q8NH94 360 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 KCNG3Q8TAE7 436 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 R3HDM4Q96D70 268 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 CNBD2Q96M20 576 aa16.88■□□□□ 0.29
HMGB3-205ENST00000455596 SLC22A1O15245 554 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 FGF16O43320 207 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 CD37P11049 281 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 CHATP28329 748 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 RPS27AP62979 156 aaKnown RBP16.87■□□□□ 0.29
HMGB3-205ENST00000455596 CD83Q01151 205 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 HNF4GQ14541 408 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 TMEM91Q6ZNR0 172 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 SLC25A48Q6ZT89 311 aaKnown RBP16.87■□□□□ 0.29
HMGB3-205ENST00000455596 ZNF554Q86TJ5 538 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 C5orf56Q8N8D9 126 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 ZNF439Q8NDP4 499 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 OR4X2Q8NGF9 303 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 OR10V1Q8NGI7 309 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 OR6M1Q8NGM8 313 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 MRPL30Q8TCC3 161 aaKnown RBP16.87■□□□□ 0.29
HMGB3-205ENST00000455596 ST6GALNAC6Q969X2 333 aa16.87■□□□□ 0.29
HMGB3-205ENST00000455596 TAF9BQ9HBM6 251 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms