RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 OR1L8Q8NGR8 309 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 SIGMAR1Q99720 223 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 RIF1Q5UIP0 2472 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 OPRK1P41145 380 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 HOXC5Q00444 222 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ANKRD37Q7Z713 158 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OR2D2Q9H210 308 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 NTMQ9P121 344 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 PRKRAO75569 313 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 AGAP20933 346 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 IER5LQ5T953 404 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 C10orf113Q5VZT2 155 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 RNF133Q8WVZ7 376 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 SGK494Q96LW2 274 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 LINC00597Q9H2U6 94 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 PDCD11Q14690 1871 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 RALGAPA2Q2PPJ7 1873 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 UPK1AO00322 258 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ZNF124Q15973 351 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 DNM1P46Q6ZS02 220 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OR10S1Q8NGN2 331 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 GATAD1Q8WUU5 269 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ARHGAP5-AS1Q96IT6 56 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 TEX37Q96LM6 180 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 MS4A6AQ9H2W1 248 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 PPP1CCP36873 323 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 ID1P41134 155 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 EWSR1Q01844 656 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS53-204ENST00000437048 DMRTA1Q5VZB9 504 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 Q8WTZ3 238 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 SPSB4Q96A44 273 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OR4C45A6NMZ5 311 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 UBE2CO00762 179 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 HPRT1P00492 218 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ERGP11308 486 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OPRM1P35372 400 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ROM1Q03395 351 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 PLAC9Q5JTB6 97 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ATP5L2Q7Z4Y8 100 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ELOVL1Q9BW60 279 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 CD160O95971 181 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 FBXL14Q8N1E6 418 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 SLC25A40Q8TBP6 338 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 GPA33Q99795 319 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 LTB4R2Q9NPC1 389 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 GPR132Q9UNW8 380 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 HOXD4P09016 255 aaPredicted RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 SRYQ05066 204 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 GBGT1Q8N5D6 347 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 DPRXA6NFQ7 191 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 NGFP01138 241 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PUSL1Q8N0Z8 303 aaKnown RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 AICDAQ9GZX7 198 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PRDM13Q9H4Q3 707 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 WBP1LQ9NX94 342 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 LINC00587B1AMM8 73 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 STARD6P59095 220 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PYCR3Q53H96 274 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 NUDT10Q8NFP7 164 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PLSCR2Q9NRY7 297 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PATJQ8NI35 1801 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 ADIPOQQ15848 244 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 C1orf100Q5SVJ3 147 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 ZNF660Q6AZW8 331 aaPredicted RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 ZADH2Q8N4Q0 377 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 TTC9CQ8N5M4 171 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 GOSR1O95249 250 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 COX5BP10606 129 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 MFAP2P55001 183 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 NPTNQ9Y639 398 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 AUP1Q9Y679 476 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 CA1P00915 261 aaPredicted RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 FAM157CP0CG43 387 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 DYNLT3P51808 116 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 MVDP53602 400 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 CNTD2Q9H8S5 307 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 HOXA4Q00056 320 aaPredicted RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 LRRC75BQ2VPJ9 315 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 OR2Y1Q8NGV0 311 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 THAP3Q8WTV1 239 aaPredicted RBP6.34□□□□□ -1.39
VPS53-204ENST00000437048 CA5BP1Q8WTZ4 195 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 SLC26A1Q9H2B4 701 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 PRO1933Q9H354 126 aa6.34□□□□□ -1.39
VPS53-204ENST00000437048 A0A1W2PS18 150 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 PLA2G10O15496 165 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 FZD5Q13467 585 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 TMEM255AQ5JRV8 349 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 SMIM8Q96KF7 97 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 HIST1H4GQ99525 98 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 ULBP3Q9BZM4 244 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 SPG11Q96JI7 2443 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 PARP14Q460N5 1801 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 NDUFA2O43678 99 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 MPZP25189 248 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 HERPUD1Q15011 391 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 ORAOV1Q8WV07 137 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 HSPB9Q9BQS6 159 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 KCNMB2Q9Y691 235 aa6.34□□□□□ -1.4
VPS53-204ENST00000437048 ONECUT2O95948 504 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 CD1BP29016 333 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms