RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GTF2F2P13984 249 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 MYL12AP19105 171 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 EBI3Q14213 229 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 ASCL4Q6XD76 172 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 JAGN1Q8N5M9 183 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 LINC00311Q8N616 119 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 Q8NFD4 153 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 MUL1Q969V5 352 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 SMIM19Q96E16 107 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 S1PR3Q99500 378 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 HSPB9Q9BQS6 159 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 GON7Q9BXV9 100 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 IFT22Q9H7X7 185 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 DCLRE1BQ9H816 532 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 FGF20Q9NP95 211 aaPredicted RBP11.4□□□□□ -0.58
SDC1-204ENST00000429035 ETAA1Q9NY74 926 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 CKLFQ9UBR5 152 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 MRPS28Q9Y2Q9 187 aaKnown RBP11.4□□□□□ -0.58
SDC1-204ENST00000429035 MCRIP1C9JLW8 97 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 SPINT2O43291 252 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 ZNF780AO75290 641 aaPredicted RBP11.39□□□□□ -0.59
SDC1-204ENST00000429035 CD1BP29016 333 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 ECI1P42126 302 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 COL7A1Q02388 2944 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 CCDC58Q4VC31 144 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 SYT6Q5T7P8 510 aaPredicted RBP11.39□□□□□ -0.59
SDC1-204ENST00000429035 C9orf66Q5T8R8 295 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 AWAT2Q6E213 333 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 ZNF497Q6ZNH5 498 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 Q8N6K4 173 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 OR52M1Q8NGK5 317 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 OR1L1Q8NH94 360 aa11.39□□□□□ -0.59
SDC1-204ENST00000429035 MRPS18AQ9NVS2 196 aaKnown RBP11.39□□□□□ -0.59
SDC1-204ENST00000429035 SIRT4Q9Y6E7 314 aaPredicted RBP11.39□□□□□ -0.59
SDC1-204ENST00000429035 KMT2CQ8NEZ4 4911 aaKnown RBP11.38□□□□□ -0.59
SDC1-204ENST00000429035 A0A1W2PPK0 400 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 SEC14L6B5MCN3 397 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 C12orf77C9JDV5 145 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 TXNL1O43396 289 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 ORC5O43913 435 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 LY86O95711 162 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 BAG2O95816 211 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 MT-ND4P03905 459 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 DCKP27707 260 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 SOX6P35712 828 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 GP2P55259 537 aaKnown RBP11.38□□□□□ -0.59
SDC1-204ENST00000429035 FOXE3Q13461 319 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 MMDQ15546 238 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 C6orf183Q5T699 404 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 GLIPR1L1Q6UWM5 242 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 PQLC1Q8N2U9 271 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 TMEM104Q8NE00 496 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 BANF2Q9H503 90 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 SPACA1Q9HBV2 294 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 S100A14Q9HCY8 104 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 RAB9BQ9NP90 201 aa11.38□□□□□ -0.59
SDC1-204ENST00000429035 CHCHD3Q9NX63 227 aaKnown RBP11.38□□□□□ -0.59
SDC1-204ENST00000429035 ZNF107Q9UII5 783 aaPredicted RBP11.38□□□□□ -0.59
SDC1-204ENST00000429035 EXOSC1Q9Y3B2 195 aaKnown RBP11.38□□□□□ -0.59
SDC1-204ENST00000429035 TRAV8-7A0A075B6U6 113 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 IRGMA1A4Y4 181 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 RAMP3O60896 148 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 WBP4O75554 376 aaKnown RBP11.37□□□□□ -0.59
SDC1-204ENST00000429035 LALBAP00709 142 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 HBZP02008 142 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 MAS1P04201 325 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 ELANEP08246 267 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 F2RL1P55085 397 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 MED21Q13503 144 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 GPR176Q14439 515 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 RAB12Q6IQ22 244 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 SLC25A48Q6ZT89 311 aaKnown RBP11.37□□□□□ -0.59
SDC1-204ENST00000429035 C10orf67Q8IYJ2 551 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 CYGBQ8WWM9 190 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 GHSRQ92847 366 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 KCTD7Q96MP8 289 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 ASCL2Q99929 193 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 SMPD3Q9NY59 655 aaPredicted RBP11.37□□□□□ -0.59
SDC1-204ENST00000429035 CLEC2DQ9UHP7 191 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 PEX16Q9Y5Y5 336 aa11.37□□□□□ -0.59
SDC1-204ENST00000429035 TRBV5-5A0A0J9YX44 114 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 UBE2QL1A1L167 161 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 CRTAPO75718 401 aaPredicted RBP11.36□□□□□ -0.59
SDC1-204ENST00000429035 IGFBP3P17936 291 aaPredicted RBP11.36□□□□□ -0.59
SDC1-204ENST00000429035 LSAMPQ13449 338 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 GNMTQ14749 295 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 KIR2DS1Q14954 304 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 ZNF260Q3ZCT1 412 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 Q499Y3 187 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 C8orf31Q8N9H6 132 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 OR8H1Q8NGG4 311 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 C4orf3Q8WVX3 66 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 ST6GALNAC6Q969X2 333 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 OR5B12Q96R08 314 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 OR14A2Q96R54 314 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 SELENOIQ9C0D9 397 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 PARP11Q9NR21 331 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 BABAM2Q9NXR7 383 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 U3KQK5 164 aa11.36□□□□□ -0.59
SDC1-204ENST00000429035 OGG1O15527 345 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms