RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 APCP25054 2843 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 SOGA1O94964 1423 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 UHRF1BP1Q6BDS2 1440 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 BRCA1P38398 1863 aaKnown RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 DICER1Q9UPY3 1922 aaKnown RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 LOC102724200A0A096LPH7 203 aaPredicted RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 IGHV1OR15-9A0A0B4J2B8 117 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 A0A1B0GXF2 115 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR6C70A6NIJ9 312 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR5H1A6NKK0 313 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PHYHO14832 338 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 AZIN1O14977 448 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SYNGR1O43759 233 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 STX10O60499 249 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 TNNC2P02585 160 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SERPINA6P08185 405 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ZNF688P0C7X2 276 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 LINC00869P0C866 280 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SLC2A1P11166 492 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 CD99P14209 185 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ME2P23368 584 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 IL3RAP26951 378 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PYCR1P32322 319 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 IFNGR2P38484 337 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 AP3S2P59780 193 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 BCL2A1Q16548 175 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 C4orf26Q17RF5 130 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 NXNL2Q5VZ03 156 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 CST9Q5W186 159 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SAXO2Q658L1 398 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PP632Q6XCG6 107 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SHISA6Q6ZSJ9 500 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 GALNT10Q86SR1 603 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PDPNQ86YL7 162 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ITPRIPQ8IWB1 547 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 LRRC34Q8IZ02 419 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 HS3ST5Q8IZT8 346 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ZFP82Q8N141 532 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 TMEM256Q8N2U0 113 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR4K5Q8NGD3 323 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR8K1Q8NGG5 319 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR4P4Q8NGL7 312 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ZNF420Q8TAQ5 688 aaPredicted RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 STOML3Q8TAV4 291 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PIGXQ8TBF5 258 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ZNF721Q8TF20 911 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 DEDD2Q8WXF8 326 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 ESR2Q92731 530 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PTH2Q96A98 100 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 FXYD5Q96DB9 178 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 C18orf15Q96N68 181 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 OR51E2Q9H255 320 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 HRASLSQ9HDD0 168 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 PARP11Q9NR21 331 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 BABAM2Q9NXR7 383 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 TAS2R9Q9NYW1 312 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.31□□□□□ -2.04
USP40-204ENST00000427947 NRCAMQ92823 1304 aa2.31□□□□□ -2.04
USP40-204ENST00000427947 POLA1P09884 1462 aaPredicted RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 TARBP1Q13395 1621 aaKnown RBP2.31□□□□□ -2.04
USP40-204ENST00000427947 F8P00451 2351 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 TRAV8-3A0A0A6YYJ7 113 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 TMEM114B3SHH9 223 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 M0R036 132 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 CXCR6O00574 342 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 TGOLN2O43493 480 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PDCD6O75340 191 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 RPP14O95059 124 aaKnown RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 CD74P04233 296 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 OR4Q2P0C623 313 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 MLNP12872 115 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PRTN3P24158 256 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PPP1R2P41236 205 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 SULT1A2P50226 295 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 MRPS25P82663 173 aaKnown RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 MEF2CQ06413 473 aaPredicted RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 MGAT3Q09327 533 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 SSX1Q16384 188 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 IMPG1Q17R60 797 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 FBXL19-AS1Q494R0 122 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 SPIN4Q56A73 249 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 KCTD16Q68DU8 428 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PPP1R2P3Q6NXS1 205 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 GUSBP11Q6P575 273 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 IGFL1Q6UW32 110 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 FAM231DQ6ZW35 169 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 OLIG3Q7RTU3 272 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 HMGN2P46Q86SG4 172 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PRNTQ86SH4 94 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 LINC00596Q86U02 117 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 C10orf67Q8IYJ2 551 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 TTLQ8NG68 377 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 ORAOV1Q8WV07 137 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 CYGBQ8WWM9 190 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 CCL17Q92583 94 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 SMARCD1Q96GM5 515 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 NARS2Q96I59 477 aaKnown RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 DHRS9Q9BPW9 319 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 ZNF2Q9BSG1 426 aaPredicted RBP2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms