RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MARVELD3Q96A59 401 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 RDH8Q9NYR8 311 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 CISD1Q9NZ45 108 aaKnown RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 ZFHX2Q9C0A1 2572 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 ZNF729A6NN14 1252 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 TSPAN9O75954 239 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 CLDN14O95500 239 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 NKX2-1P43699 371 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 HTD2P86397 168 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 HMGN3Q15651 99 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 ALKBH6Q3KRA9 238 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 ZNF880Q6PDB4 577 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 RNF144BQ7Z419 303 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 STX12Q86Y82 276 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 C9orf62Q8N4C0 152 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 LRTM2Q8N967 370 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 RELL2Q8NC24 303 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 NEU4Q8WWR8 484 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 PHYHIPLQ96FC7 376 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 SEC22AQ96IW7 307 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 C1QTNF9BB2RNN3 333 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 H0YL77 283 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 MLNRO43193 412 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 C1QTNF9P0C862 333 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 NDUFB7P17568 137 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 EFNB3Q15768 340 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 RTBDNQ9BSG5 229 aaPredicted RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 TMEM222Q9H0R3 208 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 ENY2Q9NPA8 101 aa7.09□□□□□ -1.27
USP54-203ENST00000418501 LSM5Q9Y4Y9 91 aaKnown RBP7.09□□□□□ -1.27
USP54-203ENST00000418501 ODAMA1E959 279 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 TOR1AO14656 332 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 TUSC2O75896 110 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 MPC2O95563 127 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 OR5AC1P0C628 307 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 PI3P19957 117 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 PAX5Q02548 391 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 TBC1D26Q86UD7 250 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.08□□□□□ -1.28
USP54-203ENST00000418501 A0A1B0GU03 582 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 A0A1B0GWJ7 208 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 BCL2L11O43521 198 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 IGHV1-46P01743 117 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 SCTP09683 121 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 GGNBP1Q5YKI7 109 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 PDZD9Q8IXQ8 264 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 ZNF645Q8N7E2 425 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 KDF1Q8NAX2 398 aaPredicted RBP7.08□□□□□ -1.28
USP54-203ENST00000418501 SCARB1Q8WTV0 552 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 WFIKKN1Q96NZ8 548 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 CIB3Q96Q77 187 aaPredicted RBP7.08□□□□□ -1.28
USP54-203ENST00000418501 TAS2R3Q9NYW6 316 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 SLC25A6P12236 298 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 ADAM5Q6NVV9 412 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 ZNF826PQ6ZT77 177 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 RPRMLQ8N4K4 120 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 BVESQ8NE79 360 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 WDR89Q96FK6 387 aaPredicted RBP7.08□□□□□ -1.28
USP54-203ENST00000418501 DPRXA6NFQ7 191 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 NUDT19A8MXV4 375 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 JTBO76095 146 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 IFNA5P01569 189 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 HBZP02008 142 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 F2RP25116 425 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 IGSF11Q5DX21 431 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 GAPTQ8N292 157 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 KCNRGQ8N5I3 272 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 MRGPRDQ8TDS7 321 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 TCTEX1D2Q8WW35 142 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 DYRK2Q92630 601 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 PLSCR3Q9NRY6 295 aa7.08□□□□□ -1.28
USP54-203ENST00000418501 LAMA3Q16787 3333 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 GVINP1Q7Z2Y8 2422 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 WIPF3A6NGB9 483 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 SMLR1H3BR10 107 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 CCSO14618 274 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 RRASP10301 218 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 PSG2P11465 335 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 PLA2G5P39877 138 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 ZNF266Q14584 549 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 Q3ZCU0 254 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 MYPOPQ86VE0 399 aaPredicted RBP7.07□□□□□ -1.28
USP54-203ENST00000418501 CCDC28AQ8IWP9 274 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 MBNL3Q9NUK0 354 aaKnown RBP7.07□□□□□ -1.28
USP54-203ENST00000418501 PIPOXQ9P0Z9 390 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 MBD2Q9UBB5 411 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 NCKAP5O14513 1909 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 ITGB1BP1O14713 200 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 LILRA1O75019 489 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 DFFBO76075 338 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 OR8U9P0C7N5 309 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 PPOXP50336 477 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 AESQ08117 197 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 TMEM187Q14656 261 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 FOXRED2Q8IWF2 684 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 OR8U1Q8NH10 309 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 OR51H1Q8NH63 302 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 LSM10Q969L4 123 aaKnown RBP7.07□□□□□ -1.28
USP54-203ENST00000418501 SDSLQ96GA7 329 aa7.07□□□□□ -1.28
USP54-203ENST00000418501 RAB40CQ96S21 281 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms