RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SPAG16Q8N0X2 631 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 FAM58AQ8N1B3 248 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 SVBPQ8N300 66 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 OR4D5Q8NGN0 318 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 OR4A4PQ8NGN8 299 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 NEK7Q8TDX7 302 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 IL22RA2Q969J5 263 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 SARAFQ96BY9 339 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 NARS2Q96I59 477 aaKnown RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 RTL8AQ9BWD3 113 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 ZNF629Q9UEG4 869 aaPredicted RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 Q9UFV3 132 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 INTS1Q8N201 2190 aaKnown RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 CCDC168Q8NDH2 2452 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 HCFC1P51610 2035 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 LRP5LA4QPB2 252 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 NPIPB11E5RHQ5 1161 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 SYNGR1O43759 233 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 WDR1O75083 606 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 SELEP16581 610 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 GABRA6Q16445 453 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 HIKESHIQ53FT3 197 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 IGSF11Q5DX21 431 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 SHEQ5VZ18 495 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 OR2A2Q6IF42 318 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 COMMD1Q8N668 190 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 SUMF2Q8NBJ7 301 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 OR11L1Q8NGX0 322 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 CABLES2Q9BTV7 478 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 NKX6-2Q9C056 277 aaPredicted RBP12.56□□□□□ -0.4
USP4-203ENST00000415188 MS4A7Q9GZW8 240 aaPredicted RBP12.56□□□□□ -0.4
USP4-203ENST00000415188 OR51I2Q9H344 312 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 C12orf49Q9H741 205 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 TREM2Q9NZC2 230 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 CLCF1Q9UBD9 225 aa12.56□□□□□ -0.4
USP4-203ENST00000415188 UBE2J1Q9Y385 318 aaPredicted RBP12.56□□□□□ -0.4
USP4-203ENST00000415188 DEGS1O15121 323 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 SEC11BP0C7V7 166 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 MMP9P14780 707 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 PVALBP20472 110 aaPredicted RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 GNRHRP30968 328 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 CAV2P51636 162 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 UBE2NP61088 152 aaKnown RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 DEFA5Q01523 94 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 GNMTQ14749 295 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 PXDC1Q5TGL8 231 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 DMRTC2Q8IXT2 367 aaPredicted RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 CMTM1Q8IZ96 169 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 MRPL30Q8TCC3 161 aaKnown RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 TP53RKQ96S44 253 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 TSNAXQ99598 290 aaKnown RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 GINS3Q9BRX5 216 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 CDH20Q9HBT6 801 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 FAM212BQ9NTI7 297 aaPredicted RBP12.55□□□□□ -0.4
USP4-203ENST00000415188 POLDIP2Q9Y2S7 368 aa12.55□□□□□ -0.4
USP4-203ENST00000415188 MED6O75586 246 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 ZNF14P17017 642 aaPredicted RBP12.54□□□□□ -0.4
USP4-203ENST00000415188 UCP1P25874 307 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 RAB5CP51148 216 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 F2RL1P55085 397 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 HLA-DRB3P79483 266 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 BTNL8Q6UX41 500 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 SEM1Q6ZVN7 128 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 TBC1D26Q86UD7 250 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 ZNF695Q8IW36 515 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 SLC35G3Q8N808 338 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 BOD1Q96IK1 185 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 SEC11CQ9BY50 192 aa12.54□□□□□ -0.4
USP4-203ENST00000415188 RCL1Q9Y2P8 373 aaKnown RBP12.54□□□□□ -0.4
USP4-203ENST00000415188 H0Y980 276 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 DNASE2O00115 360 aaPredicted RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 ABCD4O14678 606 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TSPAN4O14817 238 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 ZNF205O95201 554 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SCTP09683 121 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 RAC2P15153 192 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TUBG1P23258 451 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 HERPUD1Q15011 391 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 FAM76BQ5HYJ3 339 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 OR2T2Q6IF00 324 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SELENOHQ8IZQ5 122 aaKnown RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 OR5D13Q8NGL4 314 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 LYPD6BQ8NI32 183 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SECTM1Q8WVN6 248 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 KIRREL1Q96J84 757 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 HS3ST6Q96QI5 342 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 C11orf1Q9H5F2 150 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TUBG2Q9NRH3 451 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 STRAPQ9Y3F4 350 aaKnown RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 TRAV24A0A0B4J272 114 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TMEM210A6NLX4 147 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SMPD2O60906 423 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 ACAA1P09110 424 aaPredicted RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 SLC25A6P12236 298 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 RCC1P18754 421 aaPredicted RBP12.53□□□□□ -0.4
USP4-203ENST00000415188 LPAR6P43657 344 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 PPP1CBP62140 327 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 GUSBP1Q15486 140 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 TSC22D1Q15714 1073 aa12.53□□□□□ -0.4
USP4-203ENST00000415188 SWI5Q1ZZU3 235 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms