RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 DYNLT3P51808 116 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 HLA-DRB5Q30154 266 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 OR10R2Q8NGX6 335 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 OR4K15Q8NH41 348 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 CCDC107Q8WV48 283 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 GALMQ96C23 342 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 KCTD12Q96CX2 325 aaKnown RBP11.89□□□□□ -0.51
LIMS1-206ENST00000414829 CMSS1Q9BQ75 279 aaKnown RBP11.89□□□□□ -0.51
LIMS1-206ENST00000414829 FAAP24Q9BTP7 215 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 MMP28Q9H239 520 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 TAF9BQ9HBM6 251 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 GNG12Q9UBI6 72 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 JPT1Q9UK76 154 aa11.89□□□□□ -0.51
LIMS1-206ENST00000414829 A0A0A6YYD4 124 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 SMIM30A4D0T7 59 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 FOXI3A8MTJ6 420 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-206ENST00000414829 C12orf77C9JDV5 145 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 NOL3O60936 208 aaKnown RBP11.88□□□□□ -0.51
LIMS1-206ENST00000414829 MMP23AO75900 390 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 GABARAPO95166 117 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 NAPSAO96009 420 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 IGLV1-47P01700 117 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 HBZP02008 142 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 CD3GP09693 182 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 SLC2A2P11168 524 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-206ENST00000414829 HIST1H1DP16402 221 aaKnown RBP11.88□□□□□ -0.51
LIMS1-206ENST00000414829 BRS3P32247 399 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 MNDAP41218 407 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 HTD2P86397 168 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 MADCAM1Q13477 382 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 IDNKQ5T6J7 187 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 ANKRD13BQ86YJ7 626 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 OR4P4Q8NGL7 312 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 OR10X1Q8NGY0 326 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 RFESDQ8TAC1 157 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 MRPL30Q8TCC3 161 aaKnown RBP11.88□□□□□ -0.51
LIMS1-206ENST00000414829 LGALS14Q8TCE9 139 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 ARHGAP5-AS1Q96IT6 56 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 BCL7BQ9BQE9 202 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 PECRQ9BY49 303 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 ATG5Q9H1Y0 275 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 ZNF286AQ9HBT8 521 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 GFOD1Q9NXC2 390 aa11.88□□□□□ -0.51
LIMS1-206ENST00000414829 MXRA5Q9NR99 2828 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 J3QR06 171 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 IGHV4-59P01825 116 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 KIR2DS4P43632 304 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 PITPNAQ00169 270 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 KIR2DS1Q14954 304 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 HMGN3Q15651 99 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 SSX2Q16385 188 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 LTC4SQ16873 150 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 PRR18Q8N4B5 295 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 AP3S1Q92572 193 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 GCDHQ92947 438 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-206ENST00000414829 SLC25A46Q96AG3 418 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 RPEQ96AT9 228 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 DUX5Q96PT3 197 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 SSX3Q99909 188 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 CHIAQ9BZP6 476 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 RNF167Q9H6Y7 350 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIMS1-206ENST00000414829 RHBDL2Q9NX52 303 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 AK3Q9UIJ7 227 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 SCOCQ9UIL1 159 aa11.87□□□□□ -0.51
LIMS1-206ENST00000414829 SOX21Q9Y651 276 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-206ENST00000414829 A0A0B4J203 849 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 TRAV39A0A0B4J263 110 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 A0A1B0GUS0 222 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 BUB1B-PAK6H3BSN5 160 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 RAB27BO00194 218 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 TXNL1O43396 289 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 DIRAS3O95661 229 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 GSTP1P09211 210 aaKnown RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 SNRPBP14678 240 aaKnown RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 RCC1P18754 421 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 TALDO1P37837 337 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 GDNFP39905 211 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 RPL5P46777 297 aaKnown RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 ALDH3B2P48448 385 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 SERPINB10P48595 397 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 RAB7AP51149 207 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 LSM3P62310 102 aaKnown RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 FOXL1Q12952 345 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 ZNF880Q6PDB4 577 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 LHFPL4Q7Z7J7 247 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 LINC00311Q8N616 119 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-206ENST00000414829 SPATA3Q8NHX4 192 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 SETD6Q8TBK2 473 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 ACOT12Q8WYK0 555 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 TOMM40LQ969M1 308 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 OR2S2Q9NQN1 319 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 SPATA2Q9UM82 520 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 PSG11Q9UQ72 335 aa11.86□□□□□ -0.51
LIMS1-206ENST00000414829 FAM172BPA6NC97 362 aa11.85□□□□□ -0.51
LIMS1-206ENST00000414829 H3BUX3 64 aa11.85□□□□□ -0.51
LIMS1-206ENST00000414829 MFNGO00587 321 aa11.85□□□□□ -0.51
LIMS1-206ENST00000414829 GPR137BO60478 399 aa11.85□□□□□ -0.51
LIMS1-206ENST00000414829 TFAP2AP05549 437 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms