RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 AVPI1Q5T686 147 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 OTPQ5XKR4 325 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 KDM4DQ6B0I6 523 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 LINC00173Q6ZV60 143 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 GALNT10Q86SR1 603 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 LRRC28Q86X40 367 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 IFT20Q8IY31 132 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF283Q8N7M2 679 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF485Q8NCK3 441 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 CSNK1G2-AS1Q8NCQ2 148 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 OR4P4Q8NGL7 312 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 GEMIN6Q8WXD5 167 aaKnown RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 SEH1LQ96EE3 360 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 GALNT14Q96FL9 552 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 PYURFQ96I23 114 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 METTL26Q96S19 204 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 GINS3Q9BRX5 216 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 GABARAPL3Q9BY60 117 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 MROQ9BYG7 248 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 DCSTAMPQ9H295 470 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 PANK3Q9H999 370 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ISG20L2Q9H9L3 353 aaKnown RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF226Q9NYT6 803 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 SS18L2Q9UHA2 77 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 JPT1Q9UK76 154 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 NEU3Q9UQ49 428 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 POLR1DQ9Y2S0 133 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 IBTKQ9P2D0 1353 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 DENND4AQ7Z401 1863 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ADGRL2O95490 1459 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 TRAV8-6A0A0B4J262 113 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TRIM49D1C9J1S8 452 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ORC5O43913 435 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EPPINO95925 133 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 IGHV3-48P01763 117 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 C1QCP02747 245 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 IL3P08700 152 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF806P0C7X5 589 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ZSCAN5DPP0CG00 497 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 DRD3P35462 400 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CTRLP40313 264 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CD200P41217 278 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RPL35P42766 123 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 EIF2B2P49770 351 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NCBP2P52298 156 aaKnown RBP eCLIP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF138P52744 262 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RIPPLY3P57055 190 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TBPL1P62380 186 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 INCA1Q0VD86 236 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 LAMTOR4Q0VGL1 99 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CDK10Q15131 360 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RGNQ15493 299 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 PLPPR5Q32ZL2 321 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RNF212Q495C1 297 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TRMT12Q53H54 448 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NHLRC3Q5JS37 347 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM215Q68D42 235 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR10K2Q6IF99 312 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 UGT2A3Q6UWM9 527 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 PAMR1Q6UXH9 720 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 DGAT2L6Q6ZPD8 337 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RFLNAQ6ZTI6 216 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SLC16A13Q7RTY0 426 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 ZCCHC24Q8N2G6 241 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM86BQ8N661 226 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 COX18Q8N8Q8 333 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR1N2Q8NGR9 330 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR5J2Q8NH18 312 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 MCFD2Q8NI22 146 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RDH5Q92781 318 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 GHSRQ92847 366 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 CHST5Q9GZS9 411 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 GNB4Q9HAV0 340 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 LRTM1Q9HBL6 345 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 DMAC2Q9NW81 257 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RBFOX1Q9NWB1 397 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 DPM3Q9P2X0 92 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 OR12D3Q9UGF7 316 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 GNG8Q9UK08 70 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SIGLEC7Q9Y286 467 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RBM7Q9Y580 266 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NALCNQ8IZF0 1738 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM150BA6NC51 233 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RGS5O15539 181 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SPAG7O75391 227 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 FAM107AO95990 144 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 REG1AP05451 166 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 TSPAN19P0C672 248 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 METTL15P1P0C7V9 234 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 PATE4P0C8F1 98 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SULT1A3P0DMM9 295 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 SULT1A4P0DMN0 295 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 IGHV3-43DP0DP04 118 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 GABRA1P14867 456 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 GPX2P18283 190 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 NELFEP18615 380 aaKnown RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RAB3BP20337 219 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 KLF3P57682 345 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RAB5BP61020 215 aa3.1□□□□□ -1.91
HMGB1-204ENST00000399489 RHOBP62745 196 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms