RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LRRC3CA6NJW4 275 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ADAM20O43506 726 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 AADACP22760 399 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 HNF4GQ14541 408 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 TEX38Q6PEX7 206 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 MRPL41Q8IXM3 137 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 LRTM2Q8N967 370 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 BEND2Q8NDZ0 799 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 CT55Q8WUE5 264 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 RBMXL1Q96E39 390 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 SGCZQ96LD1 299 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 METTL9Q9H1A3 318 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 VSIRQ9H7M9 311 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 CDH20Q9HBT6 801 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 UBE2J1Q9Y385 318 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 LOXL2Q9Y4K0 774 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 MRPS34P82930 218 aaKnown RBP15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 PAX5Q02548 391 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 RELQ04864 619 aaPredicted RBP15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 PIGYQ3MUY2 71 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 SLC23A3Q6PIS1 610 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 DEFB123Q8N688 67 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 OR10D3Q8NH80 312 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 ABHD3Q8WU67 409 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 RSG1Q9BU20 258 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 LOC400499M0QZD8 3231 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 CHD3Q12873 2000 aaKnown RBP15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 PCSK5Q92824 1860 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 B4DEV8 164 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 LCATP04180 440 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF32P17041 273 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 ZXDAP98168 799 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF695Q8IW36 515 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 SPTSSAQ969W0 71 aa15.17■□□□□ 0.02
SQSTM1-202ENST00000389805 C3orf85A0A1B0GTC6 90 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF716A6NP11 495 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 SRD5A2P31213 254 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 IDH3GP51553 393 aaPredicted RBP15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 HERV-K104P61576 105 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 AAED1Q7RTV5 226 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 SDF2L1Q9HCN8 221 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 LYRM2Q9NU23 88 aaPredicted RBP15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 TRBV24-1A0A075B6N3 115 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 CEBPZOSA8MTT3 80 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 OR8G5Q8NG78 346 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 RNASEH2CQ8TDP1 164 aaKnown RBP15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 P4HTMQ9NXG6 502 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 DNAJC13O75165 2243 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 DOCK7Q96N67 2140 aa15.16■□□□□ 0.02
SQSTM1-202ENST00000389805 IGKV1-27A0A075B6S5 117 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF732B4DXR9 585 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 SYNGR3O43761 229 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 CHST1O43916 411 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 OPN1MWP04001 364 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 OPN1MW2P0DN77 364 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 OPN1MW3P0DN78 364 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 GZMHP20718 246 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 CRYGSP22914 178 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 SP5Q6BEB4 398 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF787Q6DD87 383 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 SLC16A14Q7RTX9 510 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 FAM185AQ8N0U4 392 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 PP6455Q8WZ26 134 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 GNPNAT1Q96EK6 184 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 C11orf1Q9H5F2 150 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF407Q9C0G0 2248 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 MAP1BP46821 2468 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 SCGB1D1O95968 90 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 HBE1P02100 147 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 GDF1P27539 372 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 RPL29P47914 159 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 RTP5Q14D33 572 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 CEACAM16Q2WEN9 425 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 NCR3LG1Q68D85 454 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 C16orf82Q7Z2V1 217 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF100Q8IYN0 542 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 IL22RA1Q8N6P7 574 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 ELOVL1Q9BW60 279 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 RPRMQ9NS64 109 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 KIAA1549Q9HCM3 1950 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 TRDCB7Z8K6 153 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 SRYQ05066 204 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 BTNL3Q6UXE8 466 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 GPR137CQ8N3F9 429 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 PSMF1Q92530 271 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 PCGF1Q9BSM1 259 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 TMEM38BQ9NVV0 291 aa15.15■□□□□ 0.02
SQSTM1-202ENST00000389805 GJE1A6NN92 205 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 M0R143 59 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 MPPED1O15442 326 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 NPSP0C0P6 89 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 PSG4Q00888 419 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 TMEM267Q0VDI3 215 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 C9orf135Q5VTT2 229 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 C6orf15Q6UXA7 325 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 SSX7Q7RTT5 188 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 OR1F12Q8NHA8 337 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 HES7Q9BYE0 225 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 ARRDC1-AS1Q9H2J1 176 aa15.14■□□□□ 0.01
SQSTM1-202ENST00000389805 FUT9Q9Y231 359 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms