RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SDCBPO00560 298 aaPredicted RBP10.8□□□□□ -0.68
VPS28-202ENST00000377348 TOR1AO14656 332 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 ORC5O43913 435 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 GPR137BO60478 399 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 CA11O75493 328 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 HBZP02008 142 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 SNRPBP14678 240 aaKnown RBP10.8□□□□□ -0.68
VPS28-202ENST00000377348 HTR1DP28221 377 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 HLA-DRB5Q30154 266 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 PLAC9Q5JTB6 97 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 C6orf183Q5T699 404 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 MINOS1Q5TGZ0 78 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 OLFML2AQ68BL7 652 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 Q6ZTK2 550 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 OR56B1Q8NGI3 324 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 ZNF596Q8TC21 504 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 PIFOQ8TCI5 191 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 TAF9BQ9HBM6 251 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 AK3Q9UIJ7 227 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 VPREB3Q9UKI3 123 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 PSG11Q9UQ72 335 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 MINOS1-NBL1R4GNA1 71 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 TMEM89A2RUT3 159 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 J3QR06 171 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 HKR1P10072 659 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 RAB6AP20340 208 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 RANBP1P43487 201 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 PRRX1P54821 245 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 LOXL3P58215 753 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 RELBQ01201 579 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 TIMM50Q3ZCQ8 353 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 GDPGP1Q6ZNW5 385 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 OR10A7Q8NGE5 316 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 OR10V1Q8NGI7 309 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 OR13F1Q8NGS4 319 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 OR9G1Q8NH87 305 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 SPATA3Q8NHX4 192 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 SETD6Q8TBK2 473 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 LGALS14Q8TCE9 139 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 FUNDC2Q9BWH2 189 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 MMP28Q9H239 520 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 CHMP1AQ9HD42 196 aaPredicted RBP10.79□□□□□ -0.68
VPS28-202ENST00000377348 MBNL3Q9NUK0 354 aaKnown RBP10.79□□□□□ -0.68
VPS28-202ENST00000377348 GFOD1Q9NXC2 390 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 DPM3Q9P2X0 92 aa10.79□□□□□ -0.68
VPS28-202ENST00000377348 A0A075B6Q4 140 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 BUB1B-PAK6H3BSN5 160 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 RAB27BO00194 218 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 F2RL2O00254 374 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 SPINT2O43291 252 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 NAPSAO96009 420 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 IDNKQ5T6J7 187 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 OR52L2PQ8NGH6 319 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 OR5H6Q8NGV6 325 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 OR10R2Q8NGX6 335 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 OR5R1Q8NH85 324 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 RAB3CQ96E17 227 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 MRPS26Q9BYN8 205 aaKnown RBP10.78□□□□□ -0.68
VPS28-202ENST00000377348 NAA50Q9GZZ1 169 aaKnown RBP10.78□□□□□ -0.68
VPS28-202ENST00000377348 C1RLQ9NZP8 487 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 HSF4Q9ULV5 492 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 KCNK7Q9Y2U2 307 aa10.78□□□□□ -0.68
VPS28-202ENST00000377348 VGLL3A8MV65 326 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 LEUTXA8MZ59 168 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 LY6LH3BQJ8 138 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 SLC31A2O15432 143 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 CRYBA1P05813 215 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 GNB3P16520 340 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 RPS19P39019 145 aaKnown RBP10.77□□□□□ -0.69
VPS28-202ENST00000377348 NCS1P62166 190 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 DIAPH2-AS1Q14236 149 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 GNMTQ14749 295 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 HMGN3Q15651 99 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 AANATQ16613 207 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 AWAT1Q58HT5 328 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 TPTE2P1Q5T6R2 138 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 ZNF880Q6PDB4 577 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 TRAT1Q6PIZ9 186 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 OR52M1Q8NGK5 317 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 PTX4Q96A99 478 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 CMSS1Q9BQ75 279 aaKnown RBP10.77□□□□□ -0.69
VPS28-202ENST00000377348 ATG5Q9H1Y0 275 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 ABCB10Q9NRK6 738 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 KCNIP1Q9NZI2 227 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 GNG12Q9UBI6 72 aa10.77□□□□□ -0.69
VPS28-202ENST00000377348 METTL21EPA6NDL7 271 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 CHST1O43916 411 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 HIST1H1DP16402 221 aaKnown RBP10.76□□□□□ -0.69
VPS28-202ENST00000377348 MDKP21741 143 aaPredicted RBP10.76□□□□□ -0.69
VPS28-202ENST00000377348 CD24P25063 80 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 ZNF134P52741 427 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 VBP1P61758 197 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 FBLN7Q53RD9 439 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 CCBE1Q6UXH8 406 aaPredicted RBP10.76□□□□□ -0.69
VPS28-202ENST00000377348 C12orf54Q6X4T0 127 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 SLC16A12Q6ZSM3 486 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 TMEM219Q86XT9 240 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 OR10X1Q8NGY0 326 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 OR2S2Q9NQN1 319 aa10.76□□□□□ -0.69
VPS28-202ENST00000377348 ELF5Q9UKW6 265 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms